Adam Biggs b5226caff8 fix(memory): share one SQLite connection per holographic store database ... Every MemoryStore instance opened its own SQLite connection guarded by its own RLock. Several providers coexist in one process (the main agent plus every delegate_task subagent), so instances pointing at the same memory_store.db raced as independent WAL writers. Combined with writes that were not rolled back on error, one connection could leave an open write transaction that pinned the write lock and made every other connection's writes fail with "database is locked" for the full busy timeout. Instances for the same database now share ONE process-wide connection and ONE re-entrant lock, so access is fully serialized and cross-connection contention is impossible. The shared connection is refcounted: closing one instance never tears it out from under a live sibling, and the last close releases it. The connection runs in autocommit (isolation_level=None) so a write that raises mid-method can never leave a dangling transaction holding the write lock; the existing explicit commit() calls become harmless no-ops. The provider's shutdown() now calls the refcount-guarded close() instead of just dropping the reference: leaving finalization to GC kept the connection (and its write lock) alive indefinitely on long-running gateways, prolonging the exact contention this fix removes. The last provider now releases the connection deterministically while siblings stay live; regression tests fail without the wiring. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>		2026-07-09 18:17:40 -07:00
..
acp	fix(acp): also preserve archived rows on model-switch / restore saves	2026-07-01 17:16:51 +05:30
acp_adapter
agent	test: fold deepseek-v4 cases into canonical reasoning-floor test, drop duplicate file	2026-07-09 15:04:14 +05:30
ci	fix(ci): classify should default to no MCP	2026-06-23 10:32:27 -07:00
cli	refactor: address Phase-2 review findings on /new boundary handoff	2026-07-09 03:21:54 +05:30
computer_use	fix(computer-use): sanitize env on the 4 remaining cua-driver spawn sites (#59165)	2026-07-05 14:48:20 -07:00
cron	fix(cron): contain any per-job exception in the due scan; harden as a class	2026-07-09 17:31:47 -07:00
dashboard	fix(dashboard): use loopback host for in-container WebSocket client (#58993) [salvage #59682] (#60092)	2026-07-07 18:33:28 +10:00
docker	fix: remove dead f-string prefixes via ruff F541 (216 sites) (#52336)	2026-07-05 13:42:46 -07:00
e2e	test(e2e): stub reset-notice session info to deflake test_new_resets_session (#60175)	2026-07-07 04:28:12 -07:00
fakes
fixtures/plugins/example-dashboard/dashboard
gateway	test(gateway): pin in-place compaction skipping the destructive rewrite	2026-07-09 18:04:00 -07:00
hermes_cli	test(cli): deflake --accept-hooks position test — one driver, one import (#61734)	2026-07-09 17:56:50 -07:00
hermes_state	feat(sessions): full prune-filter set + --redact on sessions export	2026-07-07 12:36:41 -07:00
honcho_plugin	feat(memory): Honcho OAuth connect — desktop and CLI flows + token refresh (#44335)	2026-06-22 19:16:47 -05:00
integration	fix: remove dead f-string prefixes via ruff F541 (216 sites) (#52336)	2026-07-05 13:42:46 -07:00
manual	docs(cron): scope in_channel to channels; document DM continuation knob	2026-07-01 03:16:13 -07:00
openviking_plugin	feat(openviking): add full recall prefetch policy	2026-06-24 18:53:49 +05:30
plugins	fix(memory): share one SQLite connection per holographic store database	2026-07-09 18:17:40 -07:00
providers	perf: avoid broad message prep deepcopies	2026-07-09 14:35:14 +05:30
run_agent	fix(agent): stop switch_model from pairing new provider with stale base_url	2026-07-09 16:36:06 -07:00
scripts	revert(windows): roll back terminal-popup PRs #53791 #53810 #53829 (#53853)	2026-06-27 15:59:00 -07:00
secret_sources	feat(secrets): adapt 1Password onto the SecretSource interface	2026-07-06 04:58:07 -07:00
skills	blocked-tail pass: blind opt-out default, email fallback, peopleconnect delete-wipes-suppression	2026-07-03 15:21:04 -04:00
stress	fix: remove dead f-string prefixes via ruff F541 (216 sites) (#52336)	2026-07-05 13:42:46 -07:00
tools	Merge pull request #61415 from kshitijk4poor/fix/media-tag-caption	2026-07-09 15:47:39 +05:30
tui_gateway	fix(delegation): fail-closed orphan handling + session-scoped delegation lifecycle	2026-07-08 07:06:15 -07:00
website
__init__.py
conftest.py	feat(managed-scope): add managed_scope module (resolver, loaders, key helpers)	2026-06-19 07:46:33 -07:00
run_interrupt_test.py
test_account_usage.py
test_assistant_ui_tap_compat.py	test(deps): guard @assistant-ui cluster on one tap version	2026-06-15 11:55:02 -04:00
test_atomic_replace_symlinks.py	fix(config): preserve owner on atomic writes (#56644)	2026-07-03 14:27:34 +10:00
test_background_review_list_shapes.py	fix(background-review): guard summarize against list-shaped tool responses (#59437)	2026-07-06 03:28:30 -07:00
test_background_review_session_isolation.py	test(review): add integration guards for the two isolation wirings (review)	2026-07-01 16:21:39 +05:30
test_base_url_hostname.py
test_batch_runner_checkpoint.py
test_bitwarden_secrets.py	feat(secrets): pluggable SecretSource interface + multi-source orchestrator	2026-07-06 04:58:07 -07:00
test_cli_file_drop.py
test_cli_manual_compress.py
test_cli_skin_integration.py
test_code_skew.py	fix(gateway): refuse model switch on stale checkout to avoid env_float ImportError	2026-06-24 04:16:54 +05:30
test_copilot_initiator.py	fix(copilot): set x-initiator per turn so user prompts bill as premium requests (salvage #4097) (#58544)	2026-07-05 00:44:15 -07:00
test_ctx_halving_fix.py
test_dashboard_sidecar_close_on_disconnect.py	fix(dashboard): hide sidecar sessions from history (#49269)	2026-06-19 18:06:38 -04:00
test_delegate_cascade_49148.py	fix(agent): stop delegate cascade from deleting the parent session	2026-06-21 12:09:16 -07:00
test_desktop_electron_pin.py	feat(desktop): ts-ify everything	2026-07-08 16:24:16 -07:00
test_desktop_mac_entitlements.py
test_dispatch_session_id.py	fix(dispatch): forward session_id into registry.dispatch (#28479)	2026-06-14 00:27:59 -04:00
test_empty_model_fallback.py
test_empty_session_hygiene.py
test_env_loader_op_bootstrap.py	fix(secrets): make 1Password bootstrap token reliable outside systemd	2026-07-06 04:58:07 -07:00
test_env_loader_secret_sources.py	feat(secrets): adapt 1Password onto the SecretSource interface	2026-07-06 04:58:07 -07:00
test_evidence_store.py
test_fast_safe_load.py	perf(startup): parse config + plugin manifests with libyaml CSafeLoader (#54486)	2026-06-28 15:38:39 -07:00
test_gateway_streaming_nested_config.py
test_get_tool_definitions_cache_isolation.py
test_hermes_bootstrap.py	revert(windows): roll back terminal-popup PRs #53791 #53810 #53829 (#53853)	2026-06-27 15:59:00 -07:00
test_hermes_constants.py	test: update reasoning-effort docstring guards for new 'max' level	2026-07-04 14:19:44 +05:30
test_hermes_home_profile_warning.py
test_hermes_logging.py	fix(logging): drive rotating file handlers through an async QueueListener	2026-07-05 11:44:53 +05:30
test_hermes_state.py	fix: offset-without-limit was silently ignored in get_messages	2026-07-09 01:36:46 +05:30
test_hermes_state_compression_locks.py
test_hermes_state_wal_fallback.py
test_honcho_client_concurrency.py
test_honcho_client_config.py
test_honcho_session_context.py
test_honcho_startup_fail_open.py
test_install_diverged_update.py	test(installer): cover diverged managed-clone recovery in install scripts	2026-06-30 20:11:01 +07:00
test_install_lockfile_churn.py	fix(install): discard managed lockfile churn before stashing	2026-06-25 23:49:11 -07:00
test_install_no_initial_commit.py
test_install_ps1_native_stderr_eap.py	fix(install): fail fast when uv venv genuinely fails under relaxed EAP	2026-06-18 22:11:35 +05:30
test_install_ps1_node_path_for_npm.py	test(installer): guard Ensure-NodeExeOnPath wiring in install.ps1	2026-07-07 21:17:34 +07:00
test_install_ps1_python_fallback_venv.py	test(installer): lock Python-fallback propagation into the venv stage (#50769)	2026-06-23 21:33:08 -07:00
test_install_ps1_uv_powershell_host.py	test(install): lock uv installer to a resolved PowerShell host	2026-06-18 16:26:34 +07:00
test_install_ps1_web_server_syntax_probe.py	fix(install): guard Windows desktop installs against broken web_server	2026-07-05 19:35:30 -07:00
test_install_sh_browser_install.py	test(install): track run_with_timeout extraction after #39219 refactor (#54185)	2026-06-28 03:58:01 -07:00
test_install_sh_install_method_stamp.py	fix(update): scope install-method stamp to the code tree, not $HERMES_HOME (#48188)	2026-06-18 14:14:41 +10:00
test_install_sh_node_global_prefix.py	fix(hermes): heal broken managed Node tree instead of PATH fallback	2026-06-26 20:10:20 +05:30
test_install_sh_pythonpath_sanitization.py
test_install_sh_root_fhs_uv_python_path.py
test_install_sh_setup_wizard_tty_probe.py
test_install_sh_symlink_stomp.py
test_install_sh_termux_network_prereqs.py
test_install_unmerged_index.py	fix(install): discard managed lockfile churn before stashing	2026-06-25 23:49:11 -07:00
test_ipv4_preference.py
test_lazy_session_regressions.py	fix(gateway): surface retry hint instead of silently dropping turn after /stop (#31884)	2026-06-24 23:51:31 +05:30
test_lint_config.py
test_live_system_guard_self_test.py
test_mcp_serve.py	refactor: consolidate gateway session metadata into state.db (#58899)	2026-07-05 14:01:03 -07:00
test_mini_swe_runner.py
test_minimax_model_validation.py
test_minimax_oauth.py
test_minisweagent_path.py
test_model_forces_max_completion_tokens.py
test_model_picker_scroll.py
test_model_tools.py	fix(toolsets): preserve core tools when a posture toolset is in disabled_toolsets (#57315)	2026-07-05 14:51:49 -07:00
test_model_tools_async_bridge.py
test_ollama_num_ctx.py	test(vision): cover Ollama /api/show vision capability routing (#54511)	2026-06-28 22:52:59 -07:00
test_onepassword_secrets.py	feat(secrets): add 1Password (op://) secret source	2026-07-06 04:58:07 -07:00
test_output_cap_parsing.py	fix(context): parse vLLM's token-based output-cap error format	2026-07-01 03:17:48 -07:00
test_package_json_lazy_deps.py
test_packaging_metadata.py	security(deps): enforce aiohttp CVE floor on all lazy messaging paths + coverage guard	2026-07-01 02:51:45 -07:00
test_plugin_skills.py
test_plugin_utils.py
test_process_loop_event_loop_warning.py
test_profile_isolation_runtime.py	test(profile): two-profile regression suite + preserve skills_hub monkeypatch seam	2026-06-30 15:30:06 -07:00
test_project_metadata.py	fix(memory): lazy-install supermemory + mem0 SDKs like honcho/hindsight	2026-06-29 00:25:36 -07:00
test_pty_keepalive_ws.py	feat(chat): reattach /api/pty sessions via ?attach= token	2026-07-07 15:15:37 -07:00
test_pty_session.py	feat(pty): periodic reaper wired into dashboard lifespan	2026-07-07 15:15:37 -07:00
test_retry_utils.py	refactor(retry): single-source Z.AI overload short-attempts + drop change-detector assert	2026-07-07 11:57:01 +05:30
test_run_tests_parallel.py	fix(tests): bare pytest flags pass through run_tests.sh without a '--' separator (#54008)	2026-06-27 22:43:26 -07:00
test_sanitize_tool_error.py
test_setup_temporary_outputs.py	refactor(ci): rewrite docker tests to check built container	2026-06-26 19:15:18 -07:00
test_slash_worker_watchdog.py
test_sql_injection.py
test_stale_utils_module_import.py	fix(gateway): refuse model switch on stale checkout to avoid env_float ImportError	2026-06-24 04:16:54 +05:30
test_state_db_malformed_repair.py	fix(state): detect and repair FTS write corruption that silently drops gateway history (#52798)	2026-06-25 21:18:41 -07:00
test_subprocess_home_isolation.py	fix: make profile subprocess HOME policy explicit	2026-06-14 03:20:21 -07:00
test_termux_all_extra_compat.py
test_timezone.py
test_toolset_distributions.py
test_toolsets.py	feat(mcp): adopt mcp__server__tool naming convention	2026-07-05 13:40:21 -07:00
test_trajectory_compressor.py
test_trajectory_compressor_async.py
test_transform_llm_output_hook.py
test_transform_tool_result_hook.py
test_tui_gateway_loop_noise.py	fix(tui_gateway): suppress WS peer-hangup teardown error flood (#50005) (#54126)	2026-06-28 02:35:01 -07:00
test_tui_gateway_queue_on_busy.py	fix(tui_gateway): queue mid-turn prompts instead of dropping them on a busy retry	2026-06-25 12:29:49 -05:00
test_tui_gateway_server.py	test: accept compact_rows kwarg in tui_gateway session fakes	2026-07-09 01:36:46 +05:30
test_tui_gateway_ws.py	fix(tui): start MCP discovery for websocket sessions	2026-06-28 04:14:12 -07:00
test_tui_mcp_late_refresh.py	fix(tui): refresh tool snapshot when MCP discovery lands after agent build (#48403)	2026-06-18 05:41:23 -07:00
test_utils_truthy_values.py
test_web_server.py	fix(dashboard): disable ws keepalive ping on loopback to survive event-loop stalls	2026-07-03 03:33:22 +05:30
test_wheel_locales_e2e.py
test_windows_subprocess_no_window_flags.py	test: make windows no-window-flag assertions immune to update-check daemon	2026-06-30 01:35:55 -05:00
test_yaml_indent_consistency_31999.py	fix(utils): unify YAML list indent across all config writers (#31999)	2026-06-25 23:27:44 +05:30
test_yuanbao_integration.py
test_yuanbao_markdown.py
test_yuanbao_pipeline.py	perf(yuanbao): bounded-concurrency inbound media resolve	2026-07-08 08:05:45 -07:00
test_yuanbao_proto.py
test_yuanbao_reconnect_set_active.py	fix(yuanbao): restore active singleton after WS reconnect	2026-07-05 00:41:34 -07:00
test_yuanbao_shutdown.py