Adam Biggs b5226caff8 fix(memory): share one SQLite connection per holographic store database ... Every MemoryStore instance opened its own SQLite connection guarded by its own RLock. Several providers coexist in one process (the main agent plus every delegate_task subagent), so instances pointing at the same memory_store.db raced as independent WAL writers. Combined with writes that were not rolled back on error, one connection could leave an open write transaction that pinned the write lock and made every other connection's writes fail with "database is locked" for the full busy timeout. Instances for the same database now share ONE process-wide connection and ONE re-entrant lock, so access is fully serialized and cross-connection contention is impossible. The shared connection is refcounted: closing one instance never tears it out from under a live sibling, and the last close releases it. The connection runs in autocommit (isolation_level=None) so a write that raises mid-method can never leave a dangling transaction holding the write lock; the existing explicit commit() calls become harmless no-ops. The provider's shutdown() now calls the refcount-guarded close() instead of just dropping the reference: leaving finalization to GC kept the connection (and its write lock) alive indefinitely on long-running gateways, prolonging the exact contention this fix removes. The last provider now releases the connection deterministically while siblings stay live; regression tests fail without the wiring. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>		2026-07-09 18:17:40 -07:00
..
acp
acp_adapter
agent	test: fold deepseek-v4 cases into canonical reasoning-floor test, drop duplicate file	2026-07-09 15:04:14 +05:30
ci	fix(ci): classify should default to no MCP	2026-06-23 10:32:27 -07:00
cli	refactor: address Phase-2 review findings on /new boundary handoff	2026-07-09 03:21:54 +05:30
computer_use	fix(computer-use): sanitize env on the 4 remaining cua-driver spawn sites (#59165)	2026-07-05 14:48:20 -07:00
cron	fix(cron): contain any per-job exception in the due scan; harden as a class	2026-07-09 17:31:47 -07:00
dashboard	fix(dashboard): use loopback host for in-container WebSocket client (#58993) [salvage #59682] (#60092)	2026-07-07 18:33:28 +10:00
docker	fix: remove dead f-string prefixes via ruff F541 (216 sites) (#52336)	2026-07-05 13:42:46 -07:00
e2e	test(e2e): stub reset-notice session info to deflake test_new_resets_session (#60175)	2026-07-07 04:28:12 -07:00
fakes
fixtures/plugins/example-dashboard/dashboard
gateway	test(gateway): pin in-place compaction skipping the destructive rewrite	2026-07-09 18:04:00 -07:00
hermes_cli	test(cli): deflake --accept-hooks position test — one driver, one import (#61734)	2026-07-09 17:56:50 -07:00
hermes_state	feat(sessions): full prune-filter set + --redact on sessions export	2026-07-07 12:36:41 -07:00
honcho_plugin
integration	fix: remove dead f-string prefixes via ruff F541 (216 sites) (#52336)	2026-07-05 13:42:46 -07:00
manual
openviking_plugin
plugins	fix(memory): share one SQLite connection per holographic store database	2026-07-09 18:17:40 -07:00
providers	perf: avoid broad message prep deepcopies	2026-07-09 14:35:14 +05:30
run_agent	fix(agent): stop switch_model from pairing new provider with stale base_url	2026-07-09 16:36:06 -07:00
scripts	revert(windows): roll back terminal-popup PRs #53791 #53810 #53829 (#53853)	2026-06-27 15:59:00 -07:00
secret_sources	feat(secrets): adapt 1Password onto the SecretSource interface	2026-07-06 04:58:07 -07:00
skills	blocked-tail pass: blind opt-out default, email fallback, peopleconnect delete-wipes-suppression	2026-07-03 15:21:04 -04:00
stress	fix: remove dead f-string prefixes via ruff F541 (216 sites) (#52336)	2026-07-05 13:42:46 -07:00
tools	Merge pull request #61415 from kshitijk4poor/fix/media-tag-caption	2026-07-09 15:47:39 +05:30
tui_gateway	fix(delegation): fail-closed orphan handling + session-scoped delegation lifecycle	2026-07-08 07:06:15 -07:00
website
__init__.py
conftest.py
run_interrupt_test.py	fix: thread safety for concurrent subagent delegation (#1672)	2026-03-17 02:53:33 -07:00
test_account_usage.py	feat(account-usage): add per-provider account limits module	2026-04-21 01:56:35 -07:00
test_assistant_ui_tap_compat.py	test(deps): guard @assistant-ui cluster on one tap version	2026-06-15 11:55:02 -04:00
test_atomic_replace_symlinks.py
test_background_review_list_shapes.py	fix(background-review): guard summarize against list-shaped tool responses (#59437)	2026-07-06 03:28:30 -07:00
test_background_review_session_isolation.py	test(review): add integration guards for the two isolation wirings (review)	2026-07-01 16:21:39 +05:30
test_base_url_hostname.py
test_batch_runner_checkpoint.py
test_bitwarden_secrets.py	feat(secrets): pluggable SecretSource interface + multi-source orchestrator	2026-07-06 04:58:07 -07:00
test_cli_file_drop.py	chore: prune unused imports and duplicate import redefinitions	2026-05-28 22:26:25 -07:00
test_cli_manual_compress.py
test_cli_skin_integration.py	fix(ci): stabilize main test suite regressions (#17660)	2026-04-29 23:18:55 -07:00
test_code_skew.py	fix(gateway): refuse model switch on stale checkout to avoid env_float ImportError	2026-06-24 04:16:54 +05:30
test_copilot_initiator.py	fix(copilot): set x-initiator per turn so user prompts bill as premium requests (salvage #4097) (#58544)	2026-07-05 00:44:15 -07:00
test_ctx_halving_fix.py
test_dashboard_sidecar_close_on_disconnect.py
test_delegate_cascade_49148.py	fix(agent): stop delegate cascade from deleting the parent session	2026-06-21 12:09:16 -07:00
test_desktop_electron_pin.py	feat(desktop): ts-ify everything	2026-07-08 16:24:16 -07:00
test_desktop_mac_entitlements.py	test(desktop): assert macOS device entitlements are inherited	2026-06-03 07:32:00 +07:00
test_dispatch_session_id.py
test_empty_model_fallback.py
test_empty_session_hygiene.py	fix: in-memory transcript blocks empty-session prune	2026-06-10 17:37:34 -07:00
test_env_loader_op_bootstrap.py	fix(secrets): make 1Password bootstrap token reliable outside systemd	2026-07-06 04:58:07 -07:00
test_env_loader_secret_sources.py	feat(secrets): adapt 1Password onto the SecretSource interface	2026-07-06 04:58:07 -07:00
test_evidence_store.py
test_fast_safe_load.py
test_gateway_streaming_nested_config.py
test_get_tool_definitions_cache_isolation.py
test_hermes_bootstrap.py
test_hermes_constants.py	test: update reasoning-effort docstring guards for new 'max' level	2026-07-04 14:19:44 +05:30
test_hermes_home_profile_warning.py	fix(constants): warn once when get_hermes_home() falls back under an active profile (#18746)	2026-05-02 01:49:55 -07:00
test_hermes_logging.py	fix(logging): drive rotating file handlers through an async QueueListener	2026-07-05 11:44:53 +05:30
test_hermes_state.py	fix: offset-without-limit was silently ignored in get_messages	2026-07-09 01:36:46 +05:30
test_hermes_state_compression_locks.py	fix(compression): prevent session-id fork from concurrent compressions (#34351)	2026-05-28 21:40:39 -07:00
test_hermes_state_wal_fallback.py
test_honcho_client_concurrency.py
test_honcho_client_config.py
test_honcho_session_context.py	fix(honcho): align user context peer perspective	2026-05-27 10:49:33 -07:00
test_honcho_startup_fail_open.py	fix: make Honcho startup fail open	2026-06-01 20:13:42 -07:00
test_install_diverged_update.py	test(installer): cover diverged managed-clone recovery in install scripts	2026-06-30 20:11:01 +07:00
test_install_lockfile_churn.py
test_install_no_initial_commit.py
test_install_ps1_native_stderr_eap.py
test_install_ps1_node_path_for_npm.py	test(installer): guard Ensure-NodeExeOnPath wiring in install.ps1	2026-07-07 21:17:34 +07:00
test_install_ps1_python_fallback_venv.py
test_install_ps1_uv_powershell_host.py	test(install): lock uv installer to a resolved PowerShell host	2026-06-18 16:26:34 +07:00
test_install_ps1_web_server_syntax_probe.py	fix(install): guard Windows desktop installs against broken web_server	2026-07-05 19:35:30 -07:00
test_install_sh_browser_install.py
test_install_sh_install_method_stamp.py	fix(update): scope install-method stamp to the code tree, not $HERMES_HOME (#48188)	2026-06-18 14:14:41 +10:00
test_install_sh_node_global_prefix.py	fix(hermes): heal broken managed Node tree instead of PATH fallback	2026-06-26 20:10:20 +05:30
test_install_sh_pythonpath_sanitization.py	fix: harden install.sh against inherited Python env leakage	2026-05-06 04:02:02 -07:00
test_install_sh_root_fhs_uv_python_path.py
test_install_sh_setup_wizard_tty_probe.py	fix(install): widen /dev/tty open-probe to sibling gates (#16746)	2026-04-28 06:45:55 -07:00
test_install_sh_symlink_stomp.py	chore: prune unused imports and duplicate import redefinitions	2026-05-28 22:26:25 -07:00
test_install_sh_termux_network_prereqs.py	fix: strengthen termux install network prerequisites	2026-05-07 13:04:08 -07:00
test_install_unmerged_index.py	fix(install): discard managed lockfile churn before stashing	2026-06-25 23:49:11 -07:00
test_ipv4_preference.py	chore: prune unused imports and duplicate import redefinitions	2026-05-28 22:26:25 -07:00
test_lazy_session_regressions.py	fix(gateway): surface retry hint instead of silently dropping turn after /stop (#31884)	2026-06-24 23:51:31 +05:30
test_lint_config.py	chore: prune unused imports and duplicate import redefinitions	2026-05-28 22:26:25 -07:00
test_live_system_guard_self_test.py	chore: ruff auto-fix PLR6201 resweep — tuple → set in membership tests (#27355)	2026-05-17 02:29:41 -07:00
test_mcp_serve.py	refactor: consolidate gateway session metadata into state.db (#58899)	2026-07-05 14:01:03 -07:00
test_mini_swe_runner.py
test_minimax_model_validation.py	fix(models): validate MiniMax models against static catalog (#12611, #12460, #12399, #12547)	2026-04-19 22:44:47 -07:00
test_minimax_oauth.py
test_minisweagent_path.py
test_model_forces_max_completion_tokens.py	fix(params): send max_completion_tokens for newer OpenAI families on custom endpoints	2026-06-09 23:22:10 -07:00
test_model_picker_scroll.py
test_model_tools.py	fix(toolsets): preserve core tools when a posture toolset is in disabled_toolsets (#57315)	2026-07-05 14:51:49 -07:00
test_model_tools_async_bridge.py	fix(web): run URL SSRF checks off the event loop in async paths	2026-06-04 18:04:47 -07:00
test_ollama_num_ctx.py
test_onepassword_secrets.py	feat(secrets): add 1Password (op://) secret source	2026-07-06 04:58:07 -07:00
test_output_cap_parsing.py
test_package_json_lazy_deps.py
test_packaging_metadata.py
test_plugin_skills.py	chore: prune unused imports and duplicate import redefinitions	2026-05-28 22:26:25 -07:00
test_plugin_utils.py
test_process_loop_event_loop_warning.py
test_profile_isolation_runtime.py
test_project_metadata.py	fix(memory): lazy-install supermemory + mem0 SDKs like honcho/hindsight	2026-06-29 00:25:36 -07:00
test_pty_keepalive_ws.py	feat(chat): reattach /api/pty sessions via ?attach= token	2026-07-07 15:15:37 -07:00
test_pty_session.py	feat(pty): periodic reaper wired into dashboard lifespan	2026-07-07 15:15:37 -07:00
test_retry_utils.py	refactor(retry): single-source Z.AI overload short-attempts + drop change-detector assert	2026-07-07 11:57:01 +05:30
test_run_tests_parallel.py	fix(tests): bare pytest flags pass through run_tests.sh without a '--' separator (#54008)	2026-06-27 22:43:26 -07:00
test_sanitize_tool_error.py
test_setup_temporary_outputs.py
test_slash_worker_watchdog.py
test_sql_injection.py	fix(security): eliminate SQL string formatting in execute() calls	2026-03-19 15:16:35 +01:00
test_stale_utils_module_import.py	fix(gateway): refuse model switch on stale checkout to avoid env_float ImportError	2026-06-24 04:16:54 +05:30
test_state_db_malformed_repair.py
test_subprocess_home_isolation.py	fix: make profile subprocess HOME policy explicit	2026-06-14 03:20:21 -07:00
test_termux_all_extra_compat.py	fix: add termux-all install profile and safe fallbacks	2026-05-07 13:04:08 -07:00
test_timezone.py	chore: prune unused imports and duplicate import redefinitions	2026-05-28 22:26:25 -07:00
test_toolset_distributions.py	chore: prune unused imports and duplicate import redefinitions	2026-05-28 22:26:25 -07:00
test_toolsets.py	feat(mcp): adopt mcp__server__tool naming convention	2026-07-05 13:40:21 -07:00
test_trajectory_compressor.py	fix(research): keep tool_call/tool_response pairs intact when compressing trajectories	2026-06-07 05:01:27 -07:00
test_trajectory_compressor_async.py
test_transform_llm_output_hook.py	test+docs: cover transform_llm_output hook + release author map	2026-05-07 05:46:05 -07:00
test_transform_tool_result_hook.py	test: stub has_hook in transform_tool_result hook tests	2026-06-03 06:36:46 -07:00
test_tui_gateway_loop_noise.py	fix(tui_gateway): suppress WS peer-hangup teardown error flood (#50005) (#54126)	2026-06-28 02:35:01 -07:00
test_tui_gateway_queue_on_busy.py	fix(tui_gateway): queue mid-turn prompts instead of dropping them on a busy retry	2026-06-25 12:29:49 -05:00
test_tui_gateway_server.py	test: accept compact_rows kwarg in tui_gateway session fakes	2026-07-09 01:36:46 +05:30
test_tui_gateway_ws.py	fix(tui): start MCP discovery for websocket sessions	2026-06-28 04:14:12 -07:00
test_tui_mcp_late_refresh.py	fix(tui): refresh tool snapshot when MCP discovery lands after agent build (#48403)	2026-06-18 05:41:23 -07:00
test_utils_truthy_values.py	Gate tool-gateway behind an env var, so it's not in users' faces until we're ready. Even if users enable it, it'll be blocked server-side for now, until we unlock for non-admin users on tool-gateway.	2026-03-30 13:28:10 +09:00
test_web_server.py
test_wheel_locales_e2e.py
test_windows_subprocess_no_window_flags.py	test: make windows no-window-flag assertions immune to update-check daemon	2026-06-30 01:35:55 -05:00
test_yaml_indent_consistency_31999.py
test_yuanbao_integration.py	chore: prune unused imports and duplicate import redefinitions	2026-05-28 22:26:25 -07:00
test_yuanbao_markdown.py	yuanbao platform (#16298)	2026-04-26 18:50:49 -07:00
test_yuanbao_pipeline.py	perf(yuanbao): bounded-concurrency inbound media resolve	2026-07-08 08:05:45 -07:00
test_yuanbao_proto.py
test_yuanbao_reconnect_set_active.py	fix(yuanbao): restore active singleton after WS reconnect	2026-07-05 00:41:34 -07:00
test_yuanbao_shutdown.py