Salvage of PR #8018 by @alt-glitch onto current main.
On sandbox teardown, FileSyncManager now downloads the remote .hermes/
directory, diffs against SHA-256 hashes of what was originally pushed,
and applies only changed files back to the host.
Core (tools/environments/file_sync.py):
- sync_back(): orchestrates download -> unpack -> diff -> apply with:
- Retry with exponential backoff (3 attempts, 2s/4s/8s)
- SIGINT trap + defer (prevents partial writes on Ctrl-C)
- fcntl.flock serialization (concurrent gateway sandboxes)
- Last-write-wins conflict resolution with warning
- New remote files pulled back via _infer_host_path prefix matching
Backends:
- SSH: _ssh_bulk_download — tar cf - piped over SSH
- Modal: _modal_bulk_download — exec tar cf - -> proc.stdout.read
- Daytona: _daytona_bulk_download — exec tar cf -> SDK download_file
- All three call sync_back() at the top of cleanup()
Fixes applied during salvage (vs original PR #8018):
| # | Issue | Fix |
|---|-------|-----|
| C1 | import fcntl unconditional — crashes Windows | try/except with fallback; _sync_back_locked skips locking when fcntl=None |
| W1 | assert for runtime guard (stripped by -O) | Replaced with proper if/raise RuntimeError |
| W2 | O(n*m) from _get_files_fn() called per file | Cache mapping once at start of _sync_back_impl, pass to resolve/infer |
| W3 | Dead BulkDownloadFn imports in 3 backends | Removed unused imports |
| W4 | Modal hardcodes root/.hermes, no explanation | Added docstring comment explaining Modal always runs as root |
| S1 | SHA-256 computed for new files where pushed_hash=None | Skip hashing when pushed_hash is None (comparison always False) |
| S2 | Daytona /tmp/.hermes_sync.tar never cleaned up | Added rm -f after download (best-effort) |
Tests: 49 passing (17 new: _infer_host_path edge cases, SIGINT
main/worker thread, Windows fcntl=None fallback, Daytona tar cleanup).
Based on #8018 by @alt-glitch.
* perf(ssh,modal): bulk file sync via tar pipe and tar/base64 archive
SSH: symlink-staging + tar -ch piped over SSH in a single TCP stream.
Eliminates per-file scp round-trips. Handles timeout (kills both
processes), SSH Popen failure (kills tar), and tar create failure.
Modal: in-memory gzipped tar archive, base64-encoded, decoded+extracted
in one exec call. Checks exit code and raises on failure.
Both backends use shared helpers extracted into file_sync.py:
- quoted_mkdir_command() — mirrors existing quoted_rm_command()
- unique_parent_dirs() — deduplicates parent dirs from file pairs
Migrates _ensure_remote_dirs to use the new helpers.
28 new tests (21 SSH + 7 Modal), all passing.
Closes#7465Closes#7467
* fix(modal): pipe stdin to avoid ARG_MAX, clean up review findings
- Modal bulk upload: stream base64 payload through proc.stdin in 1MB
chunks instead of embedding in command string (Modal SDK enforces
64KB ARG_MAX_BYTES — typical payloads are ~4.3MB)
- Modal single-file upload: same stdin fix, add exit code checking
- Remove what-narrating comments in ssh.py and modal.py (keep WHY
comments: symlink staging rationale, SIGPIPE, deadlock avoidance)
- Remove unnecessary `sandbox = self._sandbox` alias in modal bulk
- Daytona: use shared helpers (unique_parent_dirs, quoted_mkdir_command)
instead of inlined duplicates
---------
Co-authored-by: kshitijk4poor <82637225+kshitijk4poor@users.noreply.github.com>
Replace per-backend ad-hoc file sync with a shared FileSyncManager
that handles mtime-based change detection, remote deletion of
locally-removed files, and transactional state updates.
- New FileSyncManager class (tools/environments/file_sync.py)
with callbacks for upload/delete, rate limiting, and rollback
- Shared iter_sync_files() eliminates 3 duplicate implementations
- SSH: replace unconditional rsync with scp + mtime skip
- Modal/Daytona: replace inline _synced_files dict with manager
- All 3 backends now sync credentials + skills + cache uniformly
- Remote deletion: files removed locally are cleaned from remote
- HERMES_FORCE_FILE_SYNC=1 env var for debugging
- Base class _before_execute() simplified to empty hook
- 12 unit tests covering mtime skip, deletion, rollback, rate limiting
Shell injection via unquoted workdir interpolation in docker, singularity,
and SSH backends. When workdir contained shell metacharacters (e.g.
~/;id), arbitrary commands could execute.
Changes:
- Add shlex.quote() at each interpolation point in docker.py,
singularity.py, and ssh.py with tilde-aware quoting (keep ~
unquoted for shell expansion, quote only the subpath)
- Add _validate_workdir() allowlist in terminal_tool.py as
defense-in-depth before workdir reaches any backend
Original work by Mariano A. Nicolini (PR #5620). Salvaged with fixes
for tilde expansion (shlex.quote breaks cd ~/path) and replaced
incomplete deny-list with strict character allowlist.
Co-authored-by: Mariano A. Nicolini <entropidelic@users.noreply.github.com>
The config key skills.external_dirs and core resolution (get_all_skills_dirs,
get_external_skills_dirs in agent/skill_utils.py) already existed but several
code paths still only scanned SKILLS_DIR. Now external dirs are respected
everywhere:
- skills_categories(): scan all dirs for category discovery
- _get_category_from_path(): resolve categories against any skills root
- skill_manager_tool._find_skill(): search all dirs for edit/patch/delete
- credential_files.get_skills_directory_mount(): mount all dirs into
Docker/Singularity containers (external dirs at external_skills/<idx>)
- credential_files.iter_skills_files(): list files from all dirs for
Modal/Daytona upload
- tools/environments/ssh.py: rsync all skill dirs to remote hosts
- gateway _check_unavailable_skill(): check disabled skills across all dirs
Usage in config.yaml:
skills:
external_dirs:
- ~/repos/agent-skills/hermes
- /shared/team-skills
Skills with scripts/, templates/, and references/ subdirectories need
those files available inside sandboxed execution environments. Previously
the skills directory was missing entirely from remote backends.
Live sync — files stay current as credentials refresh and skills update:
- Docker/Singularity: bind mounts are inherently live (host changes
visible immediately)
- Modal: _sync_files() runs before each command with mtime+size caching,
pushing only changed credential and skill files (~13μs no-op overhead)
- SSH: rsync --safe-links before each command (naturally incremental)
- Daytona: _upload_if_changed() with mtime+size caching before each command
Security — symlink filtering:
- Docker/Singularity: sanitized temp copy when symlinks detected
- Modal/Daytona: iter_skills_files() skips symlinks
- SSH: rsync --safe-links skips symlinks pointing outside source tree
- Temp dir cleanup via atexit + reuse across calls
Non-root user support:
- SSH: detects remote home via echo $HOME, syncs to $HOME/.hermes/
- Daytona: detects sandbox home before sync, uploads to $HOME/.hermes/
- Docker/Modal/Singularity: run as root, /root/.hermes/ is correct
Also:
- credential_files.py: fix name/path key fallback in required_credential_files
- Singularity, SSH, Daytona: gained credential file support
- 14 tests covering symlink filtering, name/path fallback, iter_skills_files
- Merge _init_persistent_shell + _start_persistent_shell into single method
- Move execute() dispatcher and cleanup() into PersistentShellMixin
so LocalEnvironment and SSHEnvironment inherit them
- Remove broad except Exception wrappers from _execute_oneshot in both backends
- Replace try/except with os.path.exists checks in local _read_temp_files
and _cleanup_temp_files
- Remove redundant bash -c from SSH oneshot (SSH already runs in a shell)
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
- Added a new section in the README for Inference Providers, detailing setup instructions for Nous Portal, OpenRouter, and Custom Endpoints, improving user guidance for LLM connections.
- Updated messaging platform setup instructions to include Slack and WhatsApp, providing clearer steps for configuration.
- Introduced a new environment variable, TERMINAL_SANDBOX_DIR, to allow users to customize the sandbox storage location for Docker and Singularity environments.
- Refactored the Docker and Singularity environment classes to utilize the new sandbox directory for persistent workspaces, enhancing organization and usability.
- Improved handling of working directories across various environments, ensuring compatibility and clarity in execution paths.
- Introduced a shared interrupt signaling mechanism to allow tools to check for user interrupts during long-running operations.
- Updated the AIAgent to handle interrupts more effectively, ensuring in-progress tool calls are canceled and multiple interrupt messages are combined into one prompt.
- Enhanced the CLI configuration to include container resource limits (CPU, memory, disk) and persistence options for Docker, Singularity, and Modal environments.
- Improved documentation to clarify interrupt behaviors and container resource settings, providing users with better guidance on configuration and usage.
