mirror of
https://github.com/NousResearch/hermes-agent.git
synced 2026-05-30 06:41:51 +00:00
0537e2600d
Self-review follow-ups on the salvage of #33177 + #33188 + #33209: W3 (real, lock_path.write_text was non-atomic AND the read path silently resets data to an empty installed dict on JSONDecodeError — a crash mid- write could nuke ALL hub provenance, not just official-optional). Switch to the same mkstemp + fsync + atomic_replace pattern that _write_manifest already uses in this module. W5 (dead code) — _validate_category_name had one caller on origin/main (install_from_quarantine), swapped to _validate_install_parent_path by #33177. Remove the now-unused definition to avoid the attractive-nuisance of contributors picking the wrong validator. Behavior preserved on the happy path; verified all 200 skills/hub tests plus the three E2E scenarios (destructive restore, backfill idempotency, adversarial nonexistent skill) still pass after both fixes.
683 lines
26 KiB
Python
683 lines
26 KiB
Python
#!/usr/bin/env python3
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"""
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Skills Sync -- Manifest-based seeding and updating of bundled skills.
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Copies bundled skills from the repo's skills/ directory into ~/.hermes/skills/
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and uses a manifest to track which skills have been synced and their origin hash.
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Manifest format (v2): each line is "skill_name:origin_hash" where origin_hash
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is the MD5 of the bundled skill at the time it was last synced to the user dir.
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Old v1 manifests (plain names without hashes) are auto-migrated.
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Update logic:
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- NEW skills (not in manifest): copied to user dir, origin hash recorded.
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- EXISTING skills (in manifest, present in user dir):
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* If user copy matches origin hash: user hasn't modified it → safe to
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update from bundled if bundled changed. New origin hash recorded.
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* If user copy differs from origin hash: user customized it → SKIP.
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- DELETED by user (in manifest, absent from user dir): respected, not re-added.
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- REMOVED from bundled (in manifest, gone from repo): cleaned from manifest.
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The manifest lives at ~/.hermes/skills/.bundled_manifest.
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"""
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import hashlib
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import json
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import logging
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import os
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import shutil
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from datetime import datetime, timezone
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from pathlib import Path, PurePosixPath
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from hermes_constants import get_bundled_skills_dir, get_hermes_home, get_optional_skills_dir
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from agent.skill_utils import is_excluded_skill_path
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from typing import Dict, List, Tuple
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from utils import atomic_replace
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logger = logging.getLogger(__name__)
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HERMES_HOME = get_hermes_home()
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SKILLS_DIR = HERMES_HOME / "skills"
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MANIFEST_FILE = SKILLS_DIR / ".bundled_manifest"
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def _get_bundled_dir() -> Path:
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"""Locate the bundled skills/ directory.
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Checks HERMES_BUNDLED_SKILLS env var first (set by Nix wrapper),
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then a wheel-installed data dir, then falls back to the relative
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path from this source file.
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"""
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return get_bundled_skills_dir(Path(__file__).parent.parent / "skills")
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def _get_optional_dir() -> Path:
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"""Locate the official optional-skills/ directory."""
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return get_optional_skills_dir(Path(__file__).parent.parent / "optional-skills")
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def _read_manifest() -> Dict[str, str]:
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"""
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Read the manifest as a dict of {skill_name: origin_hash}.
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Handles both v1 (plain names) and v2 (name:hash) formats.
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v1 entries get an empty hash string which triggers migration on next sync.
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"""
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if not MANIFEST_FILE.exists():
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return {}
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try:
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result = {}
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for line in MANIFEST_FILE.read_text(encoding="utf-8").splitlines():
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line = line.strip()
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if not line:
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continue
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if ":" in line:
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# v2 format: name:hash
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name, _, hash_val = line.partition(":")
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result[name.strip()] = hash_val.strip()
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else:
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# v1 format: plain name — empty hash triggers migration
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result[line] = ""
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return result
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except (OSError, IOError):
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return {}
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def _write_manifest(entries: Dict[str, str]):
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"""Write the manifest file atomically in v2 format (name:hash).
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Uses a temp file + os.replace() to avoid corruption if the process
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crashes or is interrupted mid-write.
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"""
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import tempfile
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MANIFEST_FILE.parent.mkdir(parents=True, exist_ok=True)
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data = "\n".join(f"{name}:{hash_val}" for name, hash_val in sorted(entries.items())) + "\n"
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try:
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fd, tmp_path = tempfile.mkstemp(
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dir=str(MANIFEST_FILE.parent),
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prefix=".bundled_manifest_",
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suffix=".tmp",
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)
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try:
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with os.fdopen(fd, "w", encoding="utf-8") as f:
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f.write(data)
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f.flush()
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os.fsync(f.fileno())
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atomic_replace(tmp_path, MANIFEST_FILE)
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except BaseException:
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try:
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os.unlink(tmp_path)
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except OSError:
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pass
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raise
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except Exception as e:
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logger.debug("Failed to write skills manifest %s: %s", MANIFEST_FILE, e, exc_info=True)
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def _read_skill_name(skill_md: Path, fallback: str) -> str:
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"""Read the name field from SKILL.md YAML frontmatter, falling back to *fallback*."""
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try:
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content = skill_md.read_text(encoding="utf-8", errors="replace")[:4000]
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except OSError:
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return fallback
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in_frontmatter = False
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for line in content.split("\n"):
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stripped = line.strip()
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if stripped == "---":
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if in_frontmatter:
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break
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in_frontmatter = True
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continue
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if in_frontmatter and stripped.startswith("name:"):
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value = stripped.split(":", 1)[1].strip().strip("\"'")
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if value:
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return value
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return fallback
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def _discover_bundled_skills(bundled_dir: Path) -> List[Tuple[str, Path]]:
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"""
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Find all SKILL.md files in the bundled directory.
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Returns list of (skill_name, skill_directory_path) tuples.
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"""
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skills = []
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if not bundled_dir.exists():
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return skills
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for skill_md in bundled_dir.rglob("SKILL.md"):
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if is_excluded_skill_path(skill_md):
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continue
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skill_dir = skill_md.parent
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skill_name = _read_skill_name(skill_md, skill_dir.name)
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skills.append((skill_name, skill_dir))
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return skills
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def _compute_relative_dest(skill_dir: Path, bundled_dir: Path) -> Path:
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"""
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Compute the destination path in SKILLS_DIR preserving the category structure.
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e.g., bundled/skills/mlops/axolotl -> ~/.hermes/skills/mlops/axolotl
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"""
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rel = skill_dir.relative_to(bundled_dir)
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return SKILLS_DIR / rel
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def _dir_hash(directory: Path) -> str:
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"""Compute a hash of all file contents in a directory for change detection."""
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hasher = hashlib.md5()
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try:
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for fpath in sorted(directory.rglob("*")):
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if fpath.is_file():
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rel = fpath.relative_to(directory)
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hasher.update(str(rel).encode("utf-8"))
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hasher.update(fpath.read_bytes())
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except (OSError, IOError):
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pass
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return hasher.hexdigest()
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def _safe_rel_install_path(path: Path, base: Path) -> str:
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"""Return a normalized relative POSIX path, rejecting traversal/absolute paths."""
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rel = path.relative_to(base)
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posix = rel.as_posix()
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pure = PurePosixPath(posix)
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parts = [part for part in pure.parts if part not in {"", "."}]
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if pure.is_absolute() or not parts or any(part == ".." for part in parts):
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raise ValueError(f"Unsafe optional skill path: {posix}")
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return "/".join(parts)
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def _skill_file_list(skill_dir: Path) -> List[str]:
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"""List files inside a skill directory in lock-file format."""
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files: List[str] = []
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for fpath in sorted(skill_dir.rglob("*")):
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if fpath.is_file():
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files.append(fpath.relative_to(skill_dir).as_posix())
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return files
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def _content_hash(directory: Path) -> str:
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"""Return the same hash style the skills hub lock uses, falling back locally."""
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try:
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from tools.skills_guard import content_hash
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return content_hash(directory)
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except Exception:
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# Hashing is provenance metadata only; keep sync resilient if guard
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# dependencies are unavailable in a packaged/update context.
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return _dir_hash(directory)
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def _optional_skill_index() -> Dict[str, Tuple[str, str, Path]]:
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"""Return official optional skills keyed by folder name and frontmatter name.
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Values are ``(folder_name, install_path, source_dir)``. Multiple keys may
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point to the same skill so callers can accept either the folder slug used
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by the hub lock or the user-facing frontmatter name.
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"""
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optional_dir = _get_optional_dir()
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index: Dict[str, Tuple[str, str, Path]] = {}
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if not optional_dir.exists():
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return index
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for skill_md in sorted(optional_dir.rglob("SKILL.md")):
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if is_excluded_skill_path(skill_md):
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continue
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src = skill_md.parent
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try:
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install_path = _safe_rel_install_path(src, optional_dir)
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except ValueError:
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continue
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folder_name = src.name
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frontmatter_name = _read_skill_name(skill_md, folder_name)
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value = (folder_name, install_path, src)
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index[folder_name] = value
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index[frontmatter_name] = value
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return index
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def _move_to_restore_backup(path: Path, backup_root: Path) -> str:
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"""Move an existing skill directory into a restore backup, preserving rel path."""
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rel = path.relative_to(SKILLS_DIR)
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target = backup_root / rel
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target.parent.mkdir(parents=True, exist_ok=True)
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if target.exists():
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suffix = 1
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while target.with_name(f"{target.name}-{suffix}").exists():
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suffix += 1
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target = target.with_name(f"{target.name}-{suffix}")
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shutil.move(str(path), str(target))
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return rel.as_posix()
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def restore_official_optional_skill(name: str, *, restore: bool = False) -> dict:
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"""Restore one or all official optional skills from repo source.
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``restore=False`` only performs exact-match provenance backfill. ``restore=True``
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repairs already-mutated/reorganized skills by backing up matching active
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copies and copying the official optional source into its canonical path.
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"""
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index = _optional_skill_index()
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if not index:
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return {"ok": False, "message": "No official optional skills directory found.", "restored": [], "backfilled": [], "backed_up": []}
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targets = sorted(set(index.values()), key=lambda item: item[1]) if name in {"all", "*"} else []
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if not targets:
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target = index.get(name)
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if target is None:
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return {"ok": False, "message": f"Official optional skill not found: {name}", "restored": [], "backfilled": [], "backed_up": []}
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targets = [target]
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restored: List[str] = []
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backed_up: List[str] = []
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timestamp = datetime.now(timezone.utc).strftime("%Y%m%d-%H%M%S")
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backup_root = SKILLS_DIR / ".restore-backups" / f"official-optional-{timestamp}"
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for folder_name, install_path, src in targets:
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dest = SKILLS_DIR / Path(*install_path.split("/"))
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src_hash = _dir_hash(src)
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canonical_ok = dest.exists() and _dir_hash(dest) == src_hash
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# Find already-active copies of this official skill by frontmatter name
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# or folder slug, even if curator moved it into another category.
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src_frontmatter = _read_skill_name(src / "SKILL.md", folder_name)
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matches: List[Path] = []
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if SKILLS_DIR.exists():
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for skill_md in sorted(SKILLS_DIR.rglob("SKILL.md")):
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if is_excluded_skill_path(skill_md):
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continue
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candidate = skill_md.parent
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try:
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candidate.relative_to(SKILLS_DIR)
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except ValueError:
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continue
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candidate_name = _read_skill_name(skill_md, candidate.name)
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if candidate == dest:
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continue
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if candidate.name == folder_name or candidate_name in {folder_name, src_frontmatter}:
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matches.append(candidate)
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if restore:
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for match in matches:
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if match.exists():
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backed_up.append(_move_to_restore_backup(match, backup_root))
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if dest.exists() and not canonical_ok:
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backed_up.append(_move_to_restore_backup(dest, backup_root))
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if not dest.exists():
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dest.parent.mkdir(parents=True, exist_ok=True)
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shutil.copytree(src, dest)
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restored.append(folder_name)
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elif not canonical_ok:
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continue
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backfilled = _backfill_optional_provenance(quiet=True)
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return {
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"ok": True,
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"message": "Official optional skill repair complete.",
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"restored": restored,
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"backfilled": backfilled,
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"backed_up": backed_up,
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"backup_dir": str(backup_root) if backed_up else "",
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}
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def _backfill_optional_provenance(quiet: bool = False) -> List[str]:
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"""Mark already-present official optional skills as hub-installed.
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This covers the migration case where a skill used to be bundled (or was
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manually copied into the active skills tree) and later lives under
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optional-skills/. If the active copy is byte-identical to the official
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optional source, record official hub provenance without copying or
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reinstalling anything. Modified/local skills are left alone.
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"""
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optional_dir = _get_optional_dir()
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if not optional_dir.exists():
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return []
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lock_path = SKILLS_DIR / ".hub" / "lock.json"
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try:
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data = json.loads(lock_path.read_text()) if lock_path.exists() else {"version": 1, "installed": {}}
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except (json.JSONDecodeError, OSError):
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data = {"version": 1, "installed": {}}
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installed = data.setdefault("installed", {})
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existing_paths = {
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entry.get("install_path")
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for entry in installed.values()
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if isinstance(entry, dict)
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}
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backfilled: List[str] = []
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changed = False
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for skill_md in sorted(optional_dir.rglob("SKILL.md")):
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if is_excluded_skill_path(skill_md):
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continue
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src = skill_md.parent
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try:
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install_path = _safe_rel_install_path(src, optional_dir)
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except ValueError as e:
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logger.debug("Skipping optional skill with unsafe path %s: %s", src, e)
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continue
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dest = SKILLS_DIR / Path(*install_path.split("/"))
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if not dest.exists() or not dest.is_dir():
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continue
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if _dir_hash(dest) != _dir_hash(src):
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continue
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lock_name = src.name
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if lock_name in installed or install_path in existing_paths:
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continue
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timestamp = datetime.now(timezone.utc).isoformat()
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installed[lock_name] = {
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"source": "official",
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"identifier": f"official/{install_path}",
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"trust_level": "builtin",
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"scan_verdict": "backfilled",
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"content_hash": _content_hash(dest),
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"install_path": install_path,
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"files": _skill_file_list(dest),
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"metadata": {"backfilled_from": "optional-skills"},
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"installed_at": timestamp,
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"updated_at": timestamp,
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}
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existing_paths.add(install_path)
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backfilled.append(lock_name)
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changed = True
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if not quiet:
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print(f" = {lock_name} (official optional provenance backfilled)")
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if changed:
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lock_path.parent.mkdir(parents=True, exist_ok=True)
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# Atomic write so a crash mid-write can't silently wipe all provenance
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# via the JSONDecodeError fallback above (which resets `installed` to
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# an empty dict).
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import tempfile
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payload = json.dumps(data, indent=2, ensure_ascii=False) + "\n"
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fd, tmp_path = tempfile.mkstemp(
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dir=str(lock_path.parent),
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prefix=".lock_",
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suffix=".tmp",
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)
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try:
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with os.fdopen(fd, "w", encoding="utf-8") as f:
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f.write(payload)
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f.flush()
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os.fsync(f.fileno())
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atomic_replace(tmp_path, lock_path)
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except BaseException:
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try:
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os.unlink(tmp_path)
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except OSError:
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pass
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raise
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return backfilled
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def sync_skills(quiet: bool = False) -> dict:
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"""
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Sync bundled skills into ~/.hermes/skills/ using the manifest.
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Returns:
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dict with keys: copied (list), updated (list), skipped (int),
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user_modified (list), cleaned (list), total_bundled (int)
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"""
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bundled_dir = _get_bundled_dir()
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if not bundled_dir.exists():
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return {
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"copied": [], "updated": [], "skipped": 0,
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"user_modified": [], "cleaned": [], "total_bundled": 0,
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"optional_provenance_backfilled": [],
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}
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SKILLS_DIR.mkdir(parents=True, exist_ok=True)
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manifest = _read_manifest()
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bundled_skills = _discover_bundled_skills(bundled_dir)
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bundled_names = {name for name, _ in bundled_skills}
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copied = []
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updated = []
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user_modified = []
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skipped = 0
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for skill_name, skill_src in bundled_skills:
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dest = _compute_relative_dest(skill_src, bundled_dir)
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bundled_hash = _dir_hash(skill_src)
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if skill_name not in manifest:
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# ── New skill — never offered before ──
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try:
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if dest.exists():
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# User already has a skill with the same name — don't overwrite.
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# Only baseline in the manifest when the on-disk copy is
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# byte-identical to bundled (e.g. a reset that re-syncs, or
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# a coincidentally identical install); that case is harmless
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# to track. If the copy differs (custom skill, hub-installed,
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# or user-edited) skip the manifest write: recording
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# bundled_hash there would poison update detection by making
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# user_hash != origin_hash read as "user-modified" on every
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# subsequent sync, permanently blocking bundled updates.
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skipped += 1
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if _dir_hash(dest) == bundled_hash:
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manifest[skill_name] = bundled_hash
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elif not quiet:
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print(
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f" ⚠ {skill_name}: bundled version shipped but you "
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f"already have a local skill by this name — yours "
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f"was kept. Run `hermes skills reset {skill_name}` "
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f"to replace it with the bundled version."
|
|
)
|
|
else:
|
|
dest.parent.mkdir(parents=True, exist_ok=True)
|
|
shutil.copytree(skill_src, dest)
|
|
copied.append(skill_name)
|
|
manifest[skill_name] = bundled_hash
|
|
if not quiet:
|
|
print(f" + {skill_name}")
|
|
except (OSError, IOError) as e:
|
|
if not quiet:
|
|
print(f" ! Failed to copy {skill_name}: {e}")
|
|
# Do NOT add to manifest — next sync should retry
|
|
|
|
elif dest.exists():
|
|
# ── Existing skill — in manifest AND on disk ──
|
|
origin_hash = manifest.get(skill_name, "")
|
|
user_hash = _dir_hash(dest)
|
|
|
|
if not origin_hash:
|
|
# v1 migration: no origin hash recorded. Set baseline from
|
|
# user's current copy so future syncs can detect modifications.
|
|
manifest[skill_name] = user_hash
|
|
if user_hash == bundled_hash:
|
|
skipped += 1 # already in sync
|
|
else:
|
|
# Can't tell if user modified or bundled changed — be safe
|
|
skipped += 1
|
|
continue
|
|
|
|
if user_hash != origin_hash:
|
|
# User modified this skill — don't overwrite their changes
|
|
user_modified.append(skill_name)
|
|
if not quiet:
|
|
print(f" ~ {skill_name} (user-modified, skipping)")
|
|
continue
|
|
|
|
# User copy matches origin — check if bundled has a newer version
|
|
if bundled_hash != origin_hash:
|
|
try:
|
|
# Move old copy to a backup so we can restore on failure
|
|
backup = dest.with_suffix(".bak")
|
|
shutil.move(str(dest), str(backup))
|
|
try:
|
|
shutil.copytree(skill_src, dest)
|
|
manifest[skill_name] = bundled_hash
|
|
updated.append(skill_name)
|
|
if not quiet:
|
|
print(f" ↑ {skill_name} (updated)")
|
|
# Remove backup after successful copy
|
|
shutil.rmtree(backup, ignore_errors=True)
|
|
except (OSError, IOError):
|
|
# Restore from backup
|
|
if backup.exists() and not dest.exists():
|
|
shutil.move(str(backup), str(dest))
|
|
raise
|
|
except (OSError, IOError) as e:
|
|
if not quiet:
|
|
print(f" ! Failed to update {skill_name}: {e}")
|
|
else:
|
|
skipped += 1 # bundled unchanged, user unchanged
|
|
|
|
else:
|
|
# ── In manifest but not on disk — user deleted it ──
|
|
skipped += 1
|
|
|
|
# Clean stale manifest entries (skills removed from bundled dir)
|
|
cleaned = sorted(set(manifest.keys()) - bundled_names)
|
|
for name in cleaned:
|
|
del manifest[name]
|
|
|
|
# Also copy DESCRIPTION.md files for categories (if not already present)
|
|
for desc_md in bundled_dir.rglob("DESCRIPTION.md"):
|
|
rel = desc_md.relative_to(bundled_dir)
|
|
dest_desc = SKILLS_DIR / rel
|
|
if not dest_desc.exists():
|
|
try:
|
|
dest_desc.parent.mkdir(parents=True, exist_ok=True)
|
|
shutil.copy2(desc_md, dest_desc)
|
|
except (OSError, IOError) as e:
|
|
logger.debug("Could not copy %s: %s", desc_md, e)
|
|
|
|
_write_manifest(manifest)
|
|
optional_provenance_backfilled = _backfill_optional_provenance(quiet=quiet)
|
|
|
|
return {
|
|
"copied": copied,
|
|
"updated": updated,
|
|
"skipped": skipped,
|
|
"user_modified": user_modified,
|
|
"cleaned": cleaned,
|
|
"total_bundled": len(bundled_skills),
|
|
"optional_provenance_backfilled": optional_provenance_backfilled,
|
|
}
|
|
|
|
|
|
def reset_bundled_skill(name: str, restore: bool = False) -> dict:
|
|
"""
|
|
Reset a bundled skill's manifest tracking so future syncs work normally.
|
|
|
|
When a user edits a bundled skill, subsequent syncs mark it as
|
|
``user_modified`` and skip it forever — even if the user later copies
|
|
the bundled version back into place, because the manifest still holds
|
|
the *old* origin hash. This function breaks that loop.
|
|
|
|
Args:
|
|
name: The skill name (matches the manifest key / skill frontmatter name).
|
|
restore: If True, also delete the user's copy in SKILLS_DIR and let
|
|
the next sync re-copy the current bundled version. If False
|
|
(default), only clear the manifest entry — the user's
|
|
current copy is preserved but future updates work again.
|
|
|
|
Returns:
|
|
dict with keys:
|
|
- ok: bool, whether the reset succeeded
|
|
- action: one of "manifest_cleared", "restored", "not_in_manifest",
|
|
"bundled_missing"
|
|
- message: human-readable description
|
|
- synced: dict from sync_skills() if a sync was triggered, else None
|
|
"""
|
|
manifest = _read_manifest()
|
|
bundled_dir = _get_bundled_dir()
|
|
bundled_skills = _discover_bundled_skills(bundled_dir)
|
|
bundled_by_name = dict(bundled_skills)
|
|
|
|
in_manifest = name in manifest
|
|
is_bundled = name in bundled_by_name
|
|
|
|
if not in_manifest and not is_bundled:
|
|
return {
|
|
"ok": False,
|
|
"action": "not_in_manifest",
|
|
"message": (
|
|
f"'{name}' is not a tracked bundled skill. Nothing to reset. "
|
|
f"(Hub-installed skills use `hermes skills uninstall`.)"
|
|
),
|
|
"synced": None,
|
|
}
|
|
|
|
# Step 1: drop the manifest entry so next sync treats it as new
|
|
if in_manifest:
|
|
del manifest[name]
|
|
_write_manifest(manifest)
|
|
|
|
# Step 2 (optional): delete the user's copy so next sync re-copies bundled
|
|
deleted_user_copy = False
|
|
if restore:
|
|
if not is_bundled:
|
|
return {
|
|
"ok": False,
|
|
"action": "bundled_missing",
|
|
"message": (
|
|
f"'{name}' has no bundled source — manifest entry cleared "
|
|
f"but cannot restore from bundled (skill was removed upstream)."
|
|
),
|
|
"synced": None,
|
|
}
|
|
# The destination mirrors the bundled path relative to bundled_dir.
|
|
dest = _compute_relative_dest(bundled_by_name[name], bundled_dir)
|
|
if dest.exists():
|
|
try:
|
|
shutil.rmtree(dest)
|
|
deleted_user_copy = True
|
|
except (OSError, IOError) as e:
|
|
return {
|
|
"ok": False,
|
|
"action": "manifest_cleared",
|
|
"message": (
|
|
f"Cleared manifest entry for '{name}' but could not "
|
|
f"delete user copy at {dest}: {e}"
|
|
),
|
|
"synced": None,
|
|
}
|
|
|
|
# Step 3: run sync to re-baseline (or re-copy if we deleted)
|
|
synced = sync_skills(quiet=True)
|
|
|
|
if restore and deleted_user_copy:
|
|
action = "restored"
|
|
message = f"Restored '{name}' from bundled source."
|
|
elif restore:
|
|
# Nothing on disk to delete, but we re-synced — acts like a fresh install
|
|
action = "restored"
|
|
message = f"Restored '{name}' (no prior user copy, re-copied from bundled)."
|
|
else:
|
|
action = "manifest_cleared"
|
|
message = (
|
|
f"Cleared manifest entry for '{name}'. Future `hermes update` runs "
|
|
f"will re-baseline against your current copy and accept upstream changes."
|
|
)
|
|
|
|
return {"ok": True, "action": action, "message": message, "synced": synced}
|
|
|
|
|
|
if __name__ == "__main__":
|
|
print("Syncing bundled skills into ~/.hermes/skills/ ...")
|
|
result = sync_skills(quiet=False)
|
|
parts = [
|
|
f"{len(result['copied'])} new",
|
|
f"{len(result['updated'])} updated",
|
|
f"{result['skipped']} unchanged",
|
|
]
|
|
if result["user_modified"]:
|
|
names = result["user_modified"]
|
|
MAX_SHOW = 5
|
|
shown = ", ".join(names[:MAX_SHOW])
|
|
if len(names) > MAX_SHOW:
|
|
shown += f", +{len(names) - MAX_SHOW} more"
|
|
parts.append(f"{len(names)} user-modified (kept): {shown}")
|
|
if result["cleaned"]:
|
|
parts.append(f"{len(result['cleaned'])} cleaned from manifest")
|
|
if result.get("optional_provenance_backfilled"):
|
|
parts.append(f"{len(result['optional_provenance_backfilled'])} official optional backfilled")
|
|
print(f"\nDone: {', '.join(parts)}. {result['total_bundled']} total bundled.")
|