Rewrite all import statements, patch() targets, sys.modules keys,
importlib.import_module() strings, and subprocess -m references to use
hermes_agent.* paths.
Strip sys.path.insert hacks from production code (rely on editable install).
Update COMPONENT_PREFIXES for logger filtering.
Fix 3 hardcoded getLogger() calls to use __name__.
Update transport and tool registry discovery paths.
Update plugin module path strings.
Add legacy process-name patterns for gateway PID detection.
Add main() to skills_sync for console_script entry point.
Fix _get_bundled_dir() path traversal after move.
Part of #14182, #14183
file_tools._get_file_ops() built a container_config dict for Docker/
Singularity/Modal/Daytona backends but omitted docker_mount_cwd_to_workspace
and docker_forward_env. Both are read by _create_environment() from
container_config, so file tools (read_file, write_file, patch, search)
silently ignored those config values when running in Docker.
Add the two missing keys to match the container_config already built by
terminal_tool.terminal_tool().
Fixes#2672.
