Rewrite all import statements, patch() targets, sys.modules keys,
importlib.import_module() strings, and subprocess -m references to use
hermes_agent.* paths.
Strip sys.path.insert hacks from production code (rely on editable install).
Update COMPONENT_PREFIXES for logger filtering.
Fix 3 hardcoded getLogger() calls to use __name__.
Update transport and tool registry discovery paths.
Update plugin module path strings.
Add legacy process-name patterns for gateway PID detection.
Add main() to skills_sync for console_script entry point.
Fix _get_bundled_dir() path traversal after move.
Part of #14182, #14183
The original PR excluded auth.json from _DEFAULT_EXPORT_EXCLUDE_ROOT and
filtered both auth.json and .env from named profile exports, but missed
adding .env to the default profile exclusion set. Default exports would
still leak .env containing API keys.
Added .env to _DEFAULT_EXPORT_EXCLUDE_ROOT, added test coverage, and
updated the existing test that incorrectly asserted .env presence.
