Rewrite all import statements, patch() targets, sys.modules keys,
importlib.import_module() strings, and subprocess -m references to use
hermes_agent.* paths.
Strip sys.path.insert hacks from production code (rely on editable install).
Update COMPONENT_PREFIXES for logger filtering.
Fix 3 hardcoded getLogger() calls to use __name__.
Update transport and tool registry discovery paths.
Update plugin module path strings.
Add legacy process-name patterns for gateway PID detection.
Add main() to skills_sync for console_script entry point.
Fix _get_bundled_dir() path traversal after move.
Part of #14182, #14183
Hermes startup entrypoints now load ~/.hermes/.env and project fallback env files with user config taking precedence over stale shell-exported values. This makes model/provider/base URL changes in .env actually take effect after restarting Hermes. Adds a shared env loader plus regression coverage, and reproduces the original bug case where OPENAI_BASE_URL and HERMES_INFERENCE_PROVIDER remained stuck on old shell values before import.
