Second, deeper pass over tools/gateway/hermes_cli plus first pass over
the trees wave 1 missed (acp, acp_adapter, skills, computer_use, docker,
dashboard, conformance, monitoring, secret_sources, hermes_state,
providers). Same rubric as wave 1 (AGENTS.md test policy); security,
alternation/caching invariants, issue-number regressions, and E2E kept.
Real test-quality fixes found and rooted out along the way:
- tests/tools/test_command_guards.py made real auxiliary-LLM HTTPS calls
(DEFAULT_CONFIG smart-approval leaked in) — pinned approval
mode=manual via autouse fixture: 17.4s → 0.4s.
- test_model_switch_custom_providers.py / test_user_providers_model_switch.py
silently probed live provider catalogs (~2s/test) — stubbed
cached_provider_model_ids/provider_model_ids/fetch_api_models.
- test_telegram_noise_filter.py: 15-platform copy-paste matrix over
shared gateway.run logic → 3 representative platforms (55s → 3.9s).
- test_gateway_shutdown.py: stop()'s 5s interrupt-deadline loop spun on
MagicMock agents — interrupt.side_effect now clears _running_agents
(22s → 1.0s).
- test_gateway_inactivity_timeout.py poll-harness timings shrunk 3-5x
(24s → 1.1s); test_mcp_stability.py backoff/SIGTERM-grace sleeps
patched (15.4s → 2.5s); test_async_delegation.py negative-drain wait
5s → 0.5s.
- test_telegram_init_deadline.py: loop-block margin restored to 1.0s
with rationale comment — the watchdog-dump assertion needs the loop
blocked well past deadline+grace under parallel load (flaked once in
the 40-worker verification run at a 0.2s margin).
Verification: full hermetic suite via scripts/run_tests.sh —
2,438 files, 21,718 tests passed, 0 failed, 293.9s wall.
Suite totals vs original baseline: 46,820 → 19,757 test functions
(−57.8%), wall 583.5s → 293.9s (−50%), subprocess CPU 13,564s → 11,623s.
Remove unused imports (F401) and duplicate/shadowed import
redefinitions (F811) across the codebase using ruff's safe
autofixes. No behavioral changes -- imports only.
- ~1400 safe autofixes applied across 644 files (net -1072 lines)
- __init__.py re-exports preserved (excluded from F401 removal so
public re-export surfaces stay intact)
- Re-exports that are imported or monkeypatched by tests but look
unused in their defining module are kept with explicit # noqa:
F401 (gateway/run.py load_dotenv; run_agent re-exports from
agent.message_sanitization, agent.context_compressor,
agent.retry_utils, agent.prompt_builder, agent.process_bootstrap,
agent.codex_responses_adapter)
- Unsafe F841 (unused-variable) fixes deliberately skipped -- those
can change behavior when the RHS has side effects
- ruff lints remain disabled in pyproject.toml (only PLW1514 is
selected); this is a one-time cleanup, not a config change
Verification:
- python -m compileall: clean
- pytest --collect-only: all 27161 tests collect (zero import errors)
- core entry points import clean (run_agent, model_tools, cli,
toolsets, hermes_state, batch_runner, gateway)
- static scan: every name any test imports directly from an edited
module still resolves
ShellFileOperations captured the terminal env's cwd at __init__ time and
used that stale value for every subsequent _exec() call. When the user
ran `cd` via the terminal tool, `env.cwd` updated but `ops.cwd` did not.
Relative paths passed to patch_replace / read_file / write_file / search
then targeted the ORIGINAL directory instead of the current one.
Observed symptom in agent sessions:
terminal: cd .worktrees/my-branch
patch hermes_cli/main.py <old> <new>
→ returns {"success": true} with a plausible unified diff
→ but `git diff` in the worktree shows nothing
→ the patch landed in the main repo's checkout of main.py instead
The diff looked legitimate because patch_replace computes it from the
IN-MEMORY content vs new_content, not by re-reading the file. The
write itself DID succeed — it just wrote to the wrong directory's copy
of the same-named file.
Fix: _exec() now resolves cwd from live sources in this order:
1. Explicit `cwd` arg (if provided by the caller)
2. Live `self.env.cwd` (tracks `cd` commands run via terminal)
3. Init-time `self.cwd` (fallback when env has no cwd attribute)
Includes a 5-test regression suite covering:
- cd followed by relative read follows live cwd
- the exact reported bug: patch_replace with relative path after cd
- explicit cwd= arg still wins over env.cwd
- env without cwd attribute falls back to init-time cwd
- patch_replace success reflects real file state (safety rail)
Co-authored-by: teknium1 <teknium@nousresearch.com>
