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docs: add missing skills, CLI commands, and messaging env vars

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Complete the documentation gaps identified in the previous audit:

Skills catalogs:
- skills-catalog.md: Add 7 missing bundled skills — data-science/
  jupyter-live-kernel, dogfood/hermes-agent-setup, inference-sh/
  inference-sh-cli, mlops/huggingface-hub, productivity/linear,
  research/parallel-cli, social-media/xitter
- optional-skills-catalog.md: Add 8 missing optional skills —
  blockchain/base, creative/blender-mcp, creative/meme-generation,
  mcp/fastmcp, productivity/telephony, research/bioinformatics,
  security/oss-forensics, security/sherlock

CLI commands reference:
- cli-commands.md: Add full documentation for hermes mcp (add/remove/
  list/test/configure) and hermes plugins (install/update/remove/list)

Messaging platform docs:
- discord.md: Add DISCORD_REQUIRE_MENTION and
  DISCORD_FREE_RESPONSE_CHANNELS to manual config env vars section
- signal.md: Add SIGNAL_ALLOW_ALL_USERS to env var reference table
- slack.md: Add SLACK_HOME_CHANNEL_NAME to config section
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website/docs/reference/cli-commands.md
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@ -344,6 +344,41 @@ pip install -e '.[acp]'
See [ACP Editor Integration](../user-guide/features/acp.md) and [ACP Internals](../developer-guide/acp-internals.md).
## `hermes mcp`
```bash
hermes mcp <subcommand>
```
Manage MCP (Model Context Protocol) server configurations.
| Subcommand | Description |
|------------|-------------|
| `add <name> [--url URL] [--command CMD] [--args ...] [--auth oauth\|header]` | Add an MCP server with automatic tool discovery. |
| `remove <name>` (alias: `rm`) | Remove an MCP server from config. |
| `list` (alias: `ls`) | List configured MCP servers. |
| `test <name>` | Test connection to an MCP server. |
| `configure <name>` (alias: `config`) | Toggle tool selection for a server. |
See [MCP Config Reference](./mcp-config-reference.md) and [Use MCP with Hermes](../guides/use-mcp-with-hermes.md).
## `hermes plugins`
```bash
hermes plugins <subcommand>
```
Manage Hermes Agent plugins.
| Subcommand | Description |
|------------|-------------|
| `install <identifier> [--force]` | Install a plugin from a Git URL or `owner/repo`. |
| `update <name>` | Pull latest changes for an installed plugin. |
| `remove <name>` (aliases: `rm`, `uninstall`) | Remove an installed plugin. |
| `list` (alias: `ls`) | List installed plugins. |
See [Plugins](../user-guide/features/plugins.md) and [Build a Hermes Plugin](../guides/build-a-hermes-plugin.md).
## `hermes tools`
```bash