fix(mcp): stability fix pack — reload timeout, shutdown cleanup, event loop handler, OAuth non-blocking (#4757)

Four fixes for MCP server stability issues reported by community member
(terminal lockup, zombie processes, escape sequence pollution, startup hang):

1. MCP reload timeout guard (cli.py): _check_config_mcp_changes now runs
   _reload_mcp in a separate daemon thread with a 30s hard timeout. Previously,
   a hung MCP server could block the process_loop thread indefinitely, freezing
   the entire TUI (user can type but nothing happens, only Ctrl+D/Ctrl+\ work).

2. MCP stdio subprocess PID tracking (mcp_tool.py): Tracks child PIDs spawned
   by stdio_client via before/after snapshots of /proc children. On shutdown,
   _stop_mcp_loop force-kills any tracked PIDs that survived the SDK's graceful
   SIGTERM→SIGKILL cleanup. Prevents zombie MCP server processes from
   accumulating across sessions.

3. MCP event loop exception handler (mcp_tool.py): Installs
   _mcp_loop_exception_handler on the MCP background event loop — same pattern
   as the existing _suppress_closed_loop_errors on prompt_toolkit's loop.
   Suppresses benign 'Event loop is closed' RuntimeError from httpx transport
   __del__ during MCP shutdown. Salvaged from PR #2538 (acsezen).

4. MCP OAuth non-blocking (mcp_oauth.py): Replaces blocking input() call in
   _wait_for_callback with OAuthNonInteractiveError raise. Adds _is_interactive()
   TTY detection. In non-interactive environments, build_oauth_auth() still
   returns a provider (cached tokens + refresh work), but the callback handler
   raises immediately instead of blocking the MCP event loop for 120s. Re-raises
   OAuth setup failures in _run_http so failed servers are reported cleanly
   without blocking others. Salvaged from PRs #4521 (voidborne-d) and #4465
   (heathley).

Closes #2537, closes #4462
Related: #4128, #3436
This commit is contained in:
Teknium 2026-04-03 02:29:20 -07:00 committed by GitHub
parent f374ae4c61
commit cc54818d26
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5 changed files with 431 additions and 12 deletions

13
cli.py
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@ -5016,11 +5016,18 @@ class HermesCLI:
return # mcp_servers unchanged (some other section was edited)
self._config_mcp_servers = new_mcp
# Notify user and reload
# Notify user and reload. Run in a separate thread with a hard
# timeout so a hung MCP server cannot block the process_loop
# indefinitely (which would freeze the entire TUI).
print()
print("🔄 MCP server config changed — reloading connections...")
with self._busy_command(self._slow_command_status("/reload-mcp")):
self._reload_mcp()
_reload_thread = threading.Thread(
target=self._reload_mcp, daemon=True
)
_reload_thread.start()
_reload_thread.join(timeout=30)
if _reload_thread.is_alive():
print(" ⚠️ MCP reload timed out (30s). Some servers may not have reconnected.")
def _reload_mcp(self):
"""Reload MCP servers: disconnect all, re-read config.yaml, reconnect.

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@ -9,10 +9,13 @@ import pytest
from tools.mcp_oauth import (
HermesTokenStorage,
OAuthNonInteractiveError,
build_oauth_auth,
remove_oauth_tokens,
_find_free_port,
_can_open_browser,
_is_interactive,
_wait_for_callback,
)
@ -236,3 +239,99 @@ class TestRemoveOAuthTokens:
def test_no_error_when_files_missing(self, tmp_path, monkeypatch):
monkeypatch.setenv("HERMES_HOME", str(tmp_path))
remove_oauth_tokens("nonexistent") # should not raise
# ---------------------------------------------------------------------------
# Non-interactive / startup-safety tests (issue #4462)
# ---------------------------------------------------------------------------
class TestIsInteractive:
"""_is_interactive() detects headless/daemon/container environments."""
def test_false_when_stdin_not_tty(self, monkeypatch):
mock_stdin = MagicMock()
mock_stdin.isatty.return_value = False
monkeypatch.setattr("tools.mcp_oauth.sys.stdin", mock_stdin)
assert _is_interactive() is False
def test_true_when_stdin_is_tty(self, monkeypatch):
mock_stdin = MagicMock()
mock_stdin.isatty.return_value = True
monkeypatch.setattr("tools.mcp_oauth.sys.stdin", mock_stdin)
assert _is_interactive() is True
def test_false_when_stdin_has_no_isatty(self, monkeypatch):
"""Some environments replace stdin with an object without isatty()."""
mock_stdin = object() # no isatty attribute
monkeypatch.setattr("tools.mcp_oauth.sys.stdin", mock_stdin)
assert _is_interactive() is False
class TestWaitForCallbackNoBlocking:
"""_wait_for_callback() must never call input() — it raises instead."""
def test_raises_on_timeout_instead_of_input(self):
"""When no auth code arrives, raises OAuthNonInteractiveError."""
import tools.mcp_oauth as mod
import asyncio
mod._oauth_port = _find_free_port()
async def instant_sleep(_seconds):
pass
with patch.object(mod.asyncio, "sleep", instant_sleep):
with patch("builtins.input", side_effect=AssertionError("input() must not be called")):
with pytest.raises(OAuthNonInteractiveError, match="callback timed out"):
asyncio.run(_wait_for_callback())
class TestBuildOAuthAuthNonInteractive:
"""build_oauth_auth() in non-interactive mode."""
def test_noninteractive_without_cached_tokens_warns(self, tmp_path, monkeypatch, caplog):
"""Without cached tokens, non-interactive mode logs a clear warning."""
try:
from mcp.client.auth import OAuthClientProvider
except ImportError:
pytest.skip("MCP SDK auth not available")
monkeypatch.setenv("HERMES_HOME", str(tmp_path))
mock_stdin = MagicMock()
mock_stdin.isatty.return_value = False
monkeypatch.setattr("tools.mcp_oauth.sys.stdin", mock_stdin)
import logging
with caplog.at_level(logging.WARNING, logger="tools.mcp_oauth"):
auth = build_oauth_auth("atlassian", "https://mcp.atlassian.com/v1/mcp")
assert auth is not None
assert "no cached tokens found" in caplog.text.lower()
assert "non-interactive" in caplog.text.lower()
def test_noninteractive_with_cached_tokens_no_warning(self, tmp_path, monkeypatch, caplog):
"""With cached tokens, non-interactive mode logs no 'no cached tokens' warning."""
try:
from mcp.client.auth import OAuthClientProvider
except ImportError:
pytest.skip("MCP SDK auth not available")
monkeypatch.setenv("HERMES_HOME", str(tmp_path))
mock_stdin = MagicMock()
mock_stdin.isatty.return_value = False
monkeypatch.setattr("tools.mcp_oauth.sys.stdin", mock_stdin)
# Pre-populate cached tokens
d = tmp_path / "mcp-tokens"
d.mkdir(parents=True)
(d / "atlassian.json").write_text(json.dumps({
"access_token": "cached",
"token_type": "Bearer",
}))
import logging
with caplog.at_level(logging.WARNING, logger="tools.mcp_oauth"):
auth = build_oauth_auth("atlassian", "https://mcp.atlassian.com/v1/mcp")
assert auth is not None
assert "no cached tokens found" not in caplog.text.lower()

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@ -0,0 +1,143 @@
"""Tests for MCP stability fixes — event loop handler, PID tracking, shutdown robustness."""
import asyncio
import os
import signal
import threading
from unittest.mock import patch, MagicMock
import pytest
# ---------------------------------------------------------------------------
# Fix 1: MCP event loop exception handler
# ---------------------------------------------------------------------------
class TestMCPLoopExceptionHandler:
"""_mcp_loop_exception_handler suppresses benign 'Event loop is closed'."""
def test_suppresses_event_loop_closed(self):
from tools.mcp_tool import _mcp_loop_exception_handler
loop = MagicMock()
context = {"exception": RuntimeError("Event loop is closed")}
# Should NOT call default handler
_mcp_loop_exception_handler(loop, context)
loop.default_exception_handler.assert_not_called()
def test_forwards_other_runtime_errors(self):
from tools.mcp_tool import _mcp_loop_exception_handler
loop = MagicMock()
context = {"exception": RuntimeError("some other error")}
_mcp_loop_exception_handler(loop, context)
loop.default_exception_handler.assert_called_once_with(context)
def test_forwards_non_runtime_errors(self):
from tools.mcp_tool import _mcp_loop_exception_handler
loop = MagicMock()
context = {"exception": ValueError("bad value")}
_mcp_loop_exception_handler(loop, context)
loop.default_exception_handler.assert_called_once_with(context)
def test_forwards_contexts_without_exception(self):
from tools.mcp_tool import _mcp_loop_exception_handler
loop = MagicMock()
context = {"message": "just a message"}
_mcp_loop_exception_handler(loop, context)
loop.default_exception_handler.assert_called_once_with(context)
def test_handler_installed_on_mcp_loop(self):
"""_ensure_mcp_loop installs the exception handler on the new loop."""
import tools.mcp_tool as mcp_mod
try:
mcp_mod._ensure_mcp_loop()
with mcp_mod._lock:
loop = mcp_mod._mcp_loop
assert loop is not None
assert loop.get_exception_handler() is mcp_mod._mcp_loop_exception_handler
finally:
mcp_mod._stop_mcp_loop()
# ---------------------------------------------------------------------------
# Fix 2: stdio PID tracking
# ---------------------------------------------------------------------------
class TestStdioPidTracking:
"""_snapshot_child_pids and _stdio_pids track subprocess PIDs."""
def test_snapshot_returns_set(self):
from tools.mcp_tool import _snapshot_child_pids
result = _snapshot_child_pids()
assert isinstance(result, set)
# All elements should be ints
for pid in result:
assert isinstance(pid, int)
def test_stdio_pids_starts_empty(self):
from tools.mcp_tool import _stdio_pids, _lock
with _lock:
# Might have residual state from other tests, just check type
assert isinstance(_stdio_pids, set)
def test_kill_orphaned_noop_when_empty(self):
"""_kill_orphaned_mcp_children does nothing when no PIDs tracked."""
from tools.mcp_tool import _kill_orphaned_mcp_children, _stdio_pids, _lock
with _lock:
_stdio_pids.clear()
# Should not raise
_kill_orphaned_mcp_children()
def test_kill_orphaned_handles_dead_pids(self):
"""_kill_orphaned_mcp_children gracefully handles already-dead PIDs."""
from tools.mcp_tool import _kill_orphaned_mcp_children, _stdio_pids, _lock
# Use a PID that definitely doesn't exist
fake_pid = 999999999
with _lock:
_stdio_pids.add(fake_pid)
# Should not raise (ProcessLookupError is caught)
_kill_orphaned_mcp_children()
with _lock:
assert fake_pid not in _stdio_pids
# ---------------------------------------------------------------------------
# Fix 3: MCP reload timeout (cli.py)
# ---------------------------------------------------------------------------
class TestMCPReloadTimeout:
"""_check_config_mcp_changes uses a timeout on _reload_mcp."""
def test_reload_timeout_does_not_block_forever(self, tmp_path, monkeypatch):
"""If _reload_mcp hangs, the config watcher times out and returns."""
import time
# Create a mock HermesCLI-like object with the needed attributes
class FakeCLI:
_config_mtime = 0.0
_config_mcp_servers = {}
_last_config_check = 0.0
_command_running = False
config = {}
agent = None
def _reload_mcp(self):
# Simulate a hang — sleep longer than the timeout
time.sleep(60)
def _slow_command_status(self, cmd):
return cmd
# This test verifies the timeout mechanism exists in the code
# by checking that _check_config_mcp_changes doesn't call
# _reload_mcp directly (it uses a thread now)
import inspect
from cli import HermesCLI
source = inspect.getsource(HermesCLI._check_config_mcp_changes)
# The fix adds threading.Thread for _reload_mcp
assert "Thread" in source or "thread" in source.lower(), \
"_check_config_mcp_changes should use a thread for _reload_mcp"

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@ -5,6 +5,12 @@ Wraps the MCP SDK's built-in ``OAuthClientProvider`` (which implements
authorization. The SDK handles all of the heavy lifting: PKCE generation,
metadata discovery, dynamic client registration, token exchange, and refresh.
Startup safety:
The callback handler never calls blocking ``input()`` on the event loop.
In non-interactive environments (no TTY, SSH, headless), the OAuth flow
raises ``OAuthNonInteractiveError`` instead of blocking, so that the
server degrades gracefully and other MCP servers are not affected.
Usage in mcp_tool.py::
from tools.mcp_oauth import build_oauth_auth
@ -19,6 +25,7 @@ import json
import logging
import os
import socket
import sys
import threading
import webbrowser
from http.server import BaseHTTPRequestHandler, HTTPServer
@ -28,6 +35,11 @@ from urllib.parse import parse_qs, urlparse
logger = logging.getLogger(__name__)
class OAuthNonInteractiveError(RuntimeError):
"""Raised when OAuth requires user interaction but the environment is non-interactive."""
pass
_TOKEN_DIR_NAME = "mcp-tokens"
@ -164,7 +176,13 @@ async def _redirect_to_browser(auth_url: str) -> None:
async def _wait_for_callback() -> tuple[str, str | None]:
"""Start a local HTTP server on the pre-registered port and wait for the OAuth redirect."""
"""Start a local HTTP server on the pre-registered port and wait for the OAuth redirect.
If the callback times out, raises ``OAuthNonInteractiveError`` instead of
calling blocking ``input()`` the old ``input()`` call would block the
entire MCP asyncio event loop, preventing all other MCP servers from
connecting and potentially hanging Hermes startup indefinitely.
"""
global _oauth_port
port = _oauth_port or _find_free_port()
HandlerClass, result = _make_callback_handler()
@ -186,8 +204,10 @@ async def _wait_for_callback() -> tuple[str, str | None]:
code = result["auth_code"] or ""
state = result["state"]
if not code:
print(" Browser callback timed out. Paste the authorization code manually:")
code = input(" Code: ").strip()
raise OAuthNonInteractiveError(
"OAuth browser callback timed out after 120 seconds. "
"Run 'hermes mcp auth <server-name>' to authorize interactively."
)
return code, state
@ -199,6 +219,17 @@ def _can_open_browser() -> bool:
return True
def _is_interactive() -> bool:
"""Check if the current environment can support interactive OAuth flows.
Returns False in headless/daemon/container environments where no user
can interact with a browser or paste an auth code.
"""
if not hasattr(sys.stdin, "isatty") or not sys.stdin.isatty():
return False
return True
# ---------------------------------------------------------------------------
# Public API
# ---------------------------------------------------------------------------
@ -209,6 +240,11 @@ def build_oauth_auth(server_name: str, server_url: str):
Uses the MCP SDK's ``OAuthClientProvider`` which handles discovery,
registration, PKCE, token exchange, and refresh automatically.
In non-interactive environments (no TTY), this still returns a provider
so that **cached tokens and refresh flows work**. Only the interactive
authorization-code grant will fail fast with a clear error instead of
blocking the event loop.
Returns an ``OAuthClientProvider`` instance (implements ``httpx.Auth``),
or ``None`` if the MCP SDK auth module is not available.
"""
@ -219,6 +255,25 @@ def build_oauth_auth(server_name: str, server_url: str):
logger.warning("MCP SDK auth module not available — OAuth disabled")
return None
storage = HermesTokenStorage(server_name)
interactive = _is_interactive()
if not interactive:
# Check whether cached tokens exist. If they do, the SDK can still
# use them (and refresh them) without any user interaction. If not,
# we still build the provider — the callback_handler will raise
# OAuthNonInteractiveError if a fresh authorization is actually
# needed, which surfaces as a clean connection failure for this
# server only (other MCP servers are unaffected).
has_cached = storage._read_json(storage._tokens_path()) is not None
if not has_cached:
logger.warning(
"MCP server '%s' requires OAuth but no cached tokens found "
"and environment is non-interactive. The server will fail to "
"connect. Run 'hermes mcp auth %s' to authorize interactively.",
server_name, server_name,
)
global _oauth_port
_oauth_port = _find_free_port()
redirect_uri = f"http://127.0.0.1:{_oauth_port}/callback"
@ -232,14 +287,36 @@ def build_oauth_auth(server_name: str, server_url: str):
token_endpoint_auth_method="none",
)
storage = HermesTokenStorage(server_name)
# In non-interactive mode, the redirect handler logs the URL and the
# callback handler raises immediately — no blocking, no input().
redirect_handler = _redirect_to_browser
callback_handler = _wait_for_callback
if not interactive:
async def _noninteractive_redirect(auth_url: str) -> None:
logger.warning(
"MCP server '%s' needs OAuth authorization (non-interactive, "
"cannot open browser). URL: %s",
server_name, auth_url,
)
async def _noninteractive_callback() -> tuple[str, str | None]:
raise OAuthNonInteractiveError(
f"MCP server '{server_name}' requires interactive OAuth "
f"authorization but the environment is non-interactive "
f"(no TTY). Run 'hermes mcp auth {server_name}' to "
f"authorize, then restart."
)
redirect_handler = _noninteractive_redirect
callback_handler = _noninteractive_callback
return OAuthClientProvider(
server_url=server_url,
client_metadata=client_metadata,
storage=storage,
redirect_handler=_redirect_to_browser,
callback_handler=_wait_for_callback,
redirect_handler=redirect_handler,
callback_handler=callback_handler,
timeout=120.0,
)

View file

@ -842,13 +842,25 @@ class MCPServerTask:
sampling_kwargs = self._sampling.session_kwargs() if self._sampling else {}
if _MCP_NOTIFICATION_TYPES and _MCP_MESSAGE_HANDLER_SUPPORTED:
sampling_kwargs["message_handler"] = self._make_message_handler()
# Snapshot child PIDs before spawning so we can track the new one.
pids_before = _snapshot_child_pids()
async with stdio_client(server_params) as (read_stream, write_stream):
# Capture the newly spawned subprocess PID for force-kill cleanup.
new_pids = _snapshot_child_pids() - pids_before
if new_pids:
with _lock:
_stdio_pids.update(new_pids)
async with ClientSession(read_stream, write_stream, **sampling_kwargs) as session:
await session.initialize()
self.session = session
await self._discover_tools()
self._ready.set()
await self._shutdown_event.wait()
# Context exited cleanly — subprocess was terminated by the SDK.
if new_pids:
with _lock:
_stdio_pids.difference_update(new_pids)
async def _run_http(self, config: dict):
"""Run the server using HTTP/StreamableHTTP transport."""
@ -863,7 +875,10 @@ class MCPServerTask:
headers = dict(config.get("headers") or {})
connect_timeout = config.get("connect_timeout", _DEFAULT_CONNECT_TIMEOUT)
# OAuth 2.1 PKCE: build httpx.Auth handler using the MCP SDK
# OAuth 2.1 PKCE: build httpx.Auth handler using the MCP SDK.
# If OAuth setup fails (e.g. non-interactive environment without
# cached tokens), re-raise so this server is reported as failed
# without blocking other MCP servers from connecting.
_oauth_auth = None
if self._auth_type == "oauth":
try:
@ -871,6 +886,7 @@ class MCPServerTask:
_oauth_auth = build_oauth_auth(self.name, url)
except Exception as exc:
logger.warning("MCP OAuth setup failed for '%s': %s", self.name, exc)
raise
sampling_kwargs = self._sampling.session_kwargs() if self._sampling else {}
if _MCP_NOTIFICATION_TYPES and _MCP_MESSAGE_HANDLER_SUPPORTED:
@ -1044,9 +1060,56 @@ _servers: Dict[str, MCPServerTask] = {}
_mcp_loop: Optional[asyncio.AbstractEventLoop] = None
_mcp_thread: Optional[threading.Thread] = None
# Protects _mcp_loop, _mcp_thread, and _servers from concurrent access.
# Protects _mcp_loop, _mcp_thread, _servers, and _stdio_pids.
_lock = threading.Lock()
# PIDs of stdio MCP server subprocesses. Tracked so we can force-kill
# them on shutdown if the graceful cleanup (SDK context-manager teardown)
# fails or times out. PIDs are added after connection and removed on
# normal server shutdown.
_stdio_pids: set = set()
def _snapshot_child_pids() -> set:
"""Return a set of current child process PIDs.
Uses /proc on Linux, falls back to psutil, then empty set.
Used by _run_stdio to identify the subprocess spawned by stdio_client.
"""
my_pid = os.getpid()
# Linux: read from /proc
try:
children_path = f"/proc/{my_pid}/task/{my_pid}/children"
with open(children_path) as f:
return {int(p) for p in f.read().split() if p.strip()}
except (FileNotFoundError, OSError, ValueError):
pass
# Fallback: psutil
try:
import psutil
return {c.pid for c in psutil.Process(my_pid).children()}
except Exception:
pass
return set()
def _mcp_loop_exception_handler(loop, context):
"""Suppress benign 'Event loop is closed' noise during shutdown.
When the MCP event loop is stopped and closed, httpx/httpcore async
transports may fire __del__ finalizers that call call_soon() on the
dead loop. asyncio catches that RuntimeError and routes it here.
We silence it because the connection is being torn down anyway; all
other exceptions are forwarded to the default handler.
"""
exc = context.get("exception")
if isinstance(exc, RuntimeError) and "Event loop is closed" in str(exc):
return # benign shutdown race — suppress
loop.default_exception_handler(context)
def _ensure_mcp_loop():
"""Start the background event loop thread if not already running."""
@ -1055,6 +1118,7 @@ def _ensure_mcp_loop():
if _mcp_loop is not None and _mcp_loop.is_running():
return
_mcp_loop = asyncio.new_event_loop()
_mcp_loop.set_exception_handler(_mcp_loop_exception_handler)
_mcp_thread = threading.Thread(
target=_mcp_loop.run_forever,
name="mcp-event-loop",
@ -2057,6 +2121,29 @@ def shutdown_mcp_servers():
_stop_mcp_loop()
def _kill_orphaned_mcp_children() -> None:
"""Best-effort kill of MCP stdio subprocesses that survived loop shutdown.
After the MCP event loop is stopped, stdio server subprocesses *should*
have been terminated by the SDK's context-manager cleanup. If the loop
was stuck or the shutdown timed out, orphaned children may remain.
Only kills PIDs tracked in ``_stdio_pids`` never arbitrary children.
"""
import signal as _signal
with _lock:
pids = list(_stdio_pids)
_stdio_pids.clear()
for pid in pids:
try:
os.kill(pid, _signal.SIGKILL)
logger.debug("Force-killed orphaned MCP stdio process %d", pid)
except (ProcessLookupError, PermissionError, OSError):
pass # Already exited or inaccessible
def _stop_mcp_loop():
"""Stop the background event loop and join its thread."""
global _mcp_loop, _mcp_thread
@ -2069,4 +2156,10 @@ def _stop_mcp_loop():
loop.call_soon_threadsafe(loop.stop)
if thread is not None:
thread.join(timeout=5)
loop.close()
try:
loop.close()
except Exception:
pass
# After closing the loop, any stdio subprocesses that survived the
# graceful shutdown are now orphaned. Force-kill them.
_kill_orphaned_mcp_children()