Replace ml-paper-writing with research-paper-writing: full research pipeline skill

Replaces the writing-focused ml-paper-writing skill (940 lines) with a
complete end-to-end research paper pipeline (1,599 lines SKILL.md + 3,184
lines across 7 reference files).

New content:
- Full 8-phase pipeline: project setup, literature review, experiment
  design, execution/monitoring, analysis, paper drafting, review/revision,
  submission preparation
- Iterative refinement strategy guide from autoreason research (when to use
  autoreason vs critique-and-revise vs single-pass, model selection)
- Hermes agent integration: delegate_task parallel drafting, cronjob
  monitoring, memory/todo state management, skill composition
- Professional LaTeX tooling: microtype, siunitx, TikZ diagram patterns,
  algorithm2e, subcaption, latexdiff, SciencePlots
- Human evaluation design: annotation protocols, inter-annotator agreement,
  crowdsourcing platforms
- Title, Figure 1, conclusion, appendix strategy, page budget management
- Anonymization checklist, rebuttal writing, camera-ready preparation
- AAAI and COLM venue coverage (checklists, reviewer guidelines)

Preserved from ml-paper-writing:
- All writing philosophy (Nanda, Farquhar, Gopen & Swan, Lipton, Perez)
- Citation verification workflow (5-step mandatory process)
- All 6 conference templates (NeurIPS, ICML, ICLR, ACL, AAAI, COLM)
- Conference requirements, format conversion workflow
- Proactivity/collaboration guidance

Bug fixes in inherited reference files:
- BibLaTeX recommendation now correctly says natbib for conferences
- Bare except clauses fixed to except Exception
- Jinja2 template tags removed from citation-workflow.md
- Stale date caveats added to reviewer-guidelines.md

skills/research/research-paper-writing/templates/icml2026/algorithm.sty

@@ -0,0 +1,79 @@
+% ALGORITHM STYLE -- Released 8 April 1996
+%    for LaTeX-2e
+% Copyright -- 1994 Peter Williams
+% E-mail Peter.Williams@dsto.defence.gov.au
+\NeedsTeXFormat{LaTeX2e}
+\ProvidesPackage{algorithm}
+\typeout{Document Style `algorithm' - floating environment}
+
+\RequirePackage{float}
+\RequirePackage{ifthen}
+\newcommand{\ALG@within}{nothing}
+\newboolean{ALG@within}
+\setboolean{ALG@within}{false}
+\newcommand{\ALG@floatstyle}{ruled}
+\newcommand{\ALG@name}{Algorithm}
+\newcommand{\listalgorithmname}{List of \ALG@name s}
+
+% Declare Options
+% first appearance
+\DeclareOption{plain}{
+  \renewcommand{\ALG@floatstyle}{plain}
+}
+\DeclareOption{ruled}{
+  \renewcommand{\ALG@floatstyle}{ruled}
+}
+\DeclareOption{boxed}{
+  \renewcommand{\ALG@floatstyle}{boxed}
+}
+% then numbering convention
+\DeclareOption{part}{
+  \renewcommand{\ALG@within}{part}
+  \setboolean{ALG@within}{true}
+}
+\DeclareOption{chapter}{
+  \renewcommand{\ALG@within}{chapter}
+  \setboolean{ALG@within}{true}
+}
+\DeclareOption{section}{
+  \renewcommand{\ALG@within}{section}
+  \setboolean{ALG@within}{true}
+}
+\DeclareOption{subsection}{
+  \renewcommand{\ALG@within}{subsection}
+  \setboolean{ALG@within}{true}
+}
+\DeclareOption{subsubsection}{
+  \renewcommand{\ALG@within}{subsubsection}
+  \setboolean{ALG@within}{true}
+}
+\DeclareOption{nothing}{
+  \renewcommand{\ALG@within}{nothing}
+  \setboolean{ALG@within}{true}
+}
+\DeclareOption*{\edef\ALG@name{\CurrentOption}}
+
+% ALGORITHM
+%
+\ProcessOptions
+\floatstyle{\ALG@floatstyle}
+\ifthenelse{\boolean{ALG@within}}{
+  \ifthenelse{\equal{\ALG@within}{part}}
+     {\newfloat{algorithm}{htbp}{loa}[part]}{}
+  \ifthenelse{\equal{\ALG@within}{chapter}}
+     {\newfloat{algorithm}{htbp}{loa}[chapter]}{}
+  \ifthenelse{\equal{\ALG@within}{section}}
+     {\newfloat{algorithm}{htbp}{loa}[section]}{}
+  \ifthenelse{\equal{\ALG@within}{subsection}}
+     {\newfloat{algorithm}{htbp}{loa}[subsection]}{}
+  \ifthenelse{\equal{\ALG@within}{subsubsection}}
+     {\newfloat{algorithm}{htbp}{loa}[subsubsection]}{}
+  \ifthenelse{\equal{\ALG@within}{nothing}}
+     {\newfloat{algorithm}{htbp}{loa}}{}
+}{
+  \newfloat{algorithm}{htbp}{loa}
+}
+\floatname{algorithm}{\ALG@name}
+
+\newcommand{\listofalgorithms}{\listof{algorithm}{\listalgorithmname}}
+