Merge remote-tracking branch 'origin/main' into sid/types-and-lints

# Conflicts:
#	gateway/platforms/base.py
#	gateway/platforms/qqbot/adapter.py
#	gateway/platforms/slack.py
#	hermes_cli/main.py
#	scripts/batch_runner.py
#	tools/skills_tool.py
#	uv.lock

tools/environments/local.py

@@ -213,6 +213,77 @@ def _make_run_env(env: dict) -> dict:
     return run_env
 
 
+def _read_terminal_shell_init_config() -> tuple[list[str], bool]:
+    """Return (shell_init_files, auto_source_bashrc) from config.yaml.
+
+    Best-effort — returns sensible defaults on any failure so terminal
+    execution never breaks because the config file is unreadable.
+    """
+    try:
+        from hermes_cli.config import load_config
+
+        cfg = load_config() or {}
+        terminal_cfg = cfg.get("terminal") or {}
+        files = terminal_cfg.get("shell_init_files") or []
+        if not isinstance(files, list):
+            files = []
+        auto_bashrc = bool(terminal_cfg.get("auto_source_bashrc", True))
+        return [str(f) for f in files if f], auto_bashrc
+    except Exception:
+        return [], True
+
+
+def _resolve_shell_init_files() -> list[str]:
+    """Resolve the list of files to source before the login-shell snapshot.
+
+    Expands ``~`` and ``${VAR}`` references and drops anything that doesn't
+    exist on disk, so a missing ``~/.bashrc`` never breaks the snapshot.
+    The ``auto_source_bashrc`` path runs only when the user hasn't supplied
+    an explicit list — once they have, Hermes trusts them.
+    """
+    explicit, auto_bashrc = _read_terminal_shell_init_config()
+
+    candidates: list[str] = []
+    if explicit:
+        candidates.extend(explicit)
+    elif auto_bashrc and not _IS_WINDOWS:
+        # Bash's login-shell invocation does NOT source ~/.bashrc by default,
+        # so tools like nvm / asdf / pyenv that self-install there stay
+        # invisible to the snapshot without this nudge.
+        candidates.append("~/.bashrc")
+
+    resolved: list[str] = []
+    for raw in candidates:
+        try:
+            path = os.path.expandvars(os.path.expanduser(raw))
+        except Exception:
+            continue
+        if path and os.path.isfile(path):
+            resolved.append(path)
+    return resolved
+
+
+def _prepend_shell_init(cmd_string: str, files: list[str]) -> str:
+    """Prepend ``source <file>`` lines (guarded + silent) to a bash script.
+
+    Each file is wrapped so a failing rc file doesn't abort the whole
+    bootstrap: ``set +e`` keeps going on errors, ``2>/dev/null`` hides
+    noisy prompts, and ``|| true`` neutralises the exit status.
+    """
+    if not files:
+        return cmd_string
+
+    prelude_parts = ["set +e"]
+    for path in files:
+        # shlex.quote isn't available here without an import; the files list
+        # comes from os.path.expanduser output so it's a concrete absolute
+        # path.  Escape single quotes defensively anyway.
+        safe = path.replace("'", "'\\''")
+        prelude_parts.append(f"[ -r '{safe}' ] && . '{safe}' 2>/dev/null || true")
+    prelude = "\n".join(prelude_parts) + "\n"
+    return prelude + cmd_string
+
+
 class LocalEnvironment(BaseEnvironment):
     """Run commands directly on the host machine.
 
@@ -255,6 +326,16 @@ class LocalEnvironment(BaseEnvironment):
                   timeout: int = 120,
                   stdin_data: str | None = None) -> subprocess.Popen:
         bash = _find_bash()
+        # For login-shell invocations (used by init_session to build the
+        # environment snapshot), prepend sources for the user's bashrc /
+        # custom init files so tools registered outside bash_profile
+        # (nvm, asdf, pyenv, …) end up on PATH in the captured snapshot.
+        # Non-login invocations are already sourcing the snapshot and
+        # don't need this.
+        if login:
+            init_files = _resolve_shell_init_files()
+            if init_files:
+                cmd_string = _prepend_shell_init(cmd_string, init_files)
         args = [bash, "-l", "-c", cmd_string] if login else [bash, "-c", cmd_string]
         run_env = _make_run_env(self.env)