diff --git a/apps/desktop/src/themes/backend-sync.test.ts b/apps/desktop/src/themes/backend-sync.test.ts
index 64ed4f0e0b03..373333123a0c 100644
--- a/apps/desktop/src/themes/backend-sync.test.ts
+++ b/apps/desktop/src/themes/backend-sync.test.ts
@@ -39,15 +39,41 @@ describe('ingestBackendSkin', () => {
     expect($pendingSkinApply.get()).toBe('forest')
   })
 
-  it('seeds on connect so the first matching poll is a no-op, but a change applies', () => {
+  it('seed does not paint, but a later same-name skin.changed applies (missed-activation recovery)', () => {
+    // Connect while display.skin is already neon: seed records the baseline
+    // without painting (never stomp the persisted desktop theme on connect).
     ingestBackendSkin(skin('neon'), { apply: false }) // gateway.ready seed
-    ingestBackendSkin(skin('neon'), { apply: true }) // post-turn poll, unchanged
     expect($pendingSkinApply.get()).toBeNull()
 
+    // The activation event was missed (skin set while disconnected / backend
+    // restarted). Hermes re-affirms it — `hermes config set display.skin neon`
+    // or a `hermes skin set` recolor. That explicit event must repaint even
+    // though the name matches the seed.
+    ingestBackendSkin(skin('neon'), { apply: true })
+    expect($pendingSkinApply.get()).toBe('neon')
+
+    // Once applied, a repeat same-name event is a no-op again...
+    $pendingSkinApply.set(null)
+    ingestBackendSkin(skin('neon'), { apply: true })
+    expect($pendingSkinApply.get()).toBeNull()
+
+    // ...and a genuine switch still applies.
     ingestBackendSkin(skin('forest'), { apply: true }) // Hermes authored a new skin
     expect($pendingSkinApply.get()).toBe('forest')
   })
 
+  it('a reconnect re-seed after a real apply does not downgrade the applied baseline', () => {
+    ingestBackendSkin(skin('neon'), { apply: true }) // applied for real
+    $pendingSkinApply.set(null)
+
+    ingestBackendSkin(skin('neon'), { apply: false }) // reconnect: gateway.ready re-seed
+    ingestBackendSkin(skin('neon'), { apply: true }) // repeat event (e.g. in-place recolor)
+
+    // Already painted once — the repeat must not re-apply (protects a manual
+    // desktop-side theme switch from being snapped back after a reconnect).
+    expect($pendingSkinApply.get()).toBeNull()
+  })
+
   it('never registers default in the backend store (desktop keeps its own palette)', () => {
     ingestBackendSkin(skin('default'), { apply: true })
 
diff --git a/apps/desktop/src/themes/backend-sync.ts b/apps/desktop/src/themes/backend-sync.ts
index 578996404770..7ca1cc5ebf8f 100644
--- a/apps/desktop/src/themes/backend-sync.ts
+++ b/apps/desktop/src/themes/backend-sync.ts
@@ -29,10 +29,20 @@ export const $backendThemes = atom<Record<string, DesktopTheme>>({})
 /** One-shot skin name the ThemeProvider should switch to (it clears this). */
 export const $pendingSkinApply = atom<string | null>(null)
 
-// The last skin name we drove onto the desktop. Guards two things: re-applying
-// the same skin every post-turn poll, and snapping back after a manual switch —
-// only a CHANGE from this value applies. `default` is the "no opinion" sentinel.
-let lastSynced: string | null = null
+// The last skin name we synced from the backend, plus whether we ever actually
+// APPLIED it (vs merely recorded it at connect time). Guards two things:
+// re-applying the same skin on every repeat event, and snapping back after a
+// manual desktop-side switch — once applied, only a name CHANGE applies again.
+//
+// `applied` matters for the recovery path: the connect seed records the
+// baseline without painting (so a fresh connect never stomps the user's
+// persisted desktop theme). If the activation event was missed (backend
+// restart, or the skin was activated while disconnected), the desktop believes
+// it is synced while visibly not themed. A later explicit `skin.changed` for
+// that SAME name — Hermes re-running `hermes config set display.skin X`, or
+// `hermes skin set` recoloring the active skin — is an intentional apply and
+// must repaint, not no-op against the seed.
+let lastSynced: { applied: boolean; name: string } | null = null
 
 /** Test-only: reset the module's apply guard + registry between cases. */
 export function __resetBackendSkinSync(): void {
@@ -75,14 +85,18 @@ export function ingestBackendSkin(skin: HermesSkin | undefined | null, { apply }
   }
 
   if (!apply) {
-    // Connect-time seed: record the baseline so a later poll is a no-op.
-    lastSynced = name
+    // Connect-time seed: record the baseline WITHOUT painting. Keep an earlier
+    // real apply's flag if a reconnect re-seeds the same name, so a post-
+    // reconnect repeat event doesn't re-apply over a manual desktop switch.
+    if (lastSynced?.name !== name || !lastSynced.applied) {
+      lastSynced = { applied: false, name }
+    }
 
     return
   }
 
-  if (name !== lastSynced) {
-    lastSynced = name
+  if (name !== lastSynced?.name || !lastSynced.applied) {
+    lastSynced = { applied: true, name }
     $pendingSkinApply.set(name)
   }
 }
diff --git a/hermes_cli/config.py b/hermes_cli/config.py
index 93dd86fad599..4fa44862420d 100644
--- a/hermes_cli/config.py
+++ b/hermes_cli/config.py
@@ -8986,6 +8986,22 @@ def set_config_value(key: str, value: str, force: bool = False):
     if env_var and key != "terminal.cwd":
         save_env_value(env_var, _terminal_env_value(value))
 
+    # Setting display.skin is an explicit "apply this skin NOW" — bump the skin
+    # file's mtime so the gateway's skin watcher sees a signature move even when
+    # the NAME is unchanged. Without this, re-affirming the already-configured
+    # skin (`hermes config set display.skin X` while display.skin is already X —
+    # the recovery path when a surface missed the original activation) is
+    # invisible to the watcher: its signature is (name, skin-file mtime) and
+    # neither part moved. Built-ins have no file; a name switch already moves
+    # the signature for them.
+    if key == "display.skin" and isinstance(value, str) and value:
+        try:
+            _skin_file = get_hermes_home() / "skins" / f"{value}.yaml"
+            if _skin_file.exists():
+                _skin_file.touch()
+        except Exception:
+            pass  # best-effort: the write above already succeeded
+
     # Mask the echoed value when the (possibly nested) key is credential-shaped
     # — e.g. `hermes config set model.api_key cfut_...` routes to config.yaml
     # (lowercase, so it misses the .env api_keys list above) and would otherwise
diff --git a/tests/hermes_cli/test_set_config_value.py b/tests/hermes_cli/test_set_config_value.py
index ad9641300df5..0e2cb6fd57cf 100644
--- a/tests/hermes_cli/test_set_config_value.py
+++ b/tests/hermes_cli/test_set_config_value.py
@@ -630,3 +630,49 @@ class TestValidateConfigKey:
         from hermes_cli.config import _validate_config_key
         is_known, suggestion = _validate_config_key("agent._max_turns")
         assert not is_known, "Sub-key typo under a known top-level key must still be flagged"
+
+
+# ---------------------------------------------------------------------------
+# display.skin → touch the skin file (live re-affirm broadcast)
+# ---------------------------------------------------------------------------
+
+class TestDisplaySkinTouch:
+    """Setting display.skin must bump the named skin file's mtime.
+
+    The gateway's skin watcher broadcasts ``skin.changed`` on a signature move
+    of (active name, skin-file mtime). Re-affirming the already-configured skin
+    (`hermes config set display.skin X` while it is already X — the recovery
+    path when a surface missed the original activation) moves NEITHER part, so
+    without the touch the explicit apply is invisible to every live surface.
+    """
+
+    def test_reaffirming_same_skin_moves_the_watcher_signature(self, _isolated_hermes_home):
+        import os as _os
+        skins = _isolated_hermes_home / "skins"
+        skins.mkdir()
+        skin_file = skins / "synthwave.yaml"
+        skin_file.write_text("name: synthwave\ncolors:\n  background: '#1a1030'\n")
+        # Age the file so an mtime bump is unambiguous even on coarse clocks.
+        _os.utime(skin_file, (1_000_000_000, 1_000_000_000))
+
+        set_config_value("display.skin", "synthwave")
+        first = skin_file.stat().st_mtime
+        assert first > 1_000_000_000
+
+        _os.utime(skin_file, (1_000_000_000, 1_000_000_000))
+        set_config_value("display.skin", "synthwave")  # same name, re-affirmed
+        assert skin_file.stat().st_mtime > 1_000_000_000
+
+    def test_builtin_or_missing_skin_file_is_fine(self, _isolated_hermes_home):
+        """Built-ins have no user file — the set must still succeed cleanly."""
+        set_config_value("display.skin", "mono")
+        assert "skin: mono" in _read_config(_isolated_hermes_home)
+
+    def test_touch_preserves_skin_file_contents(self, _isolated_hermes_home):
+        skins = _isolated_hermes_home / "skins"
+        skins.mkdir()
+        body = "name: neon\ncolors:\n  ui_accent: '#ff33aa'\n"
+        (skins / "neon.yaml").write_text(body)
+
+        set_config_value("display.skin", "neon")
+        assert (skins / "neon.yaml").read_text() == body